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Marine Sciences Division

Publications

Find publications on renewable marine energy, environment, and national security

Search for reports and papers by Marine Science research scientists. Full documents are available for some reports.


Recent Publications

(612 publications to date)

2018

  • Balaguru K., S. Doney, L. Bianucci, P.J. Rasch, L. Leung, J. Yoon, and I.D. Lima. 2018. "Linking deep convection and phytoplankton blooms in the northern Labrador Sea in a changing climate." PLoS One 13, no. 1:Article No. e0191509. PNNL-SA-131791. doi:10.1371/journal.pone.0191509
  • Cade S.E., L. Kuo, and I.R. Schultz. 2018. "Polybrominated diphenyl ethers and their hydroxylated and methoxylated derivatives in seafood obtained from Puget Sound, WA." Science of the Total Environment 630. PNNL-SA-132941. doi:10.1016/j.scitotenv.2018.02.301
  • Copping A.E., A.M. Gorton, and M.C. Freeman. 2018. Data Transferability and Collection Consistency in Marine Renewable Energy. PNNL-27995. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., V.I. Cullinan, A.B. Borde, C.M. Gunn, and R.M. Thom. 2018. "High-Frequency Greenhouse Gas Flux Measurement System Detects Winter Storm Surge Effects on Salt Marsh." Global Change Biology 24, no. 12:5961-5971. PNNL-SA-135874. doi:10.1111/gcb.14430
  • Duncan J.P., Z. Deng, J.L. Arnold, T. Fu, B.A. Trumbo, T.J. Carlson, and D. Zhou. 2018. "Physical and Ecological Evaluation of a Fish-Friendly Surface Spillway." Ecological Engineering 110. PNNL-SA-126408. doi:10.1016/j.ecoleng.2017.10.012
  • Ebberts B.D., B.D. Zelinsky, J.P. Karnezis, C. Studebaker, S. Lopez-Johnston, A.M. Creason, and L. Krasnow, et al. 2018. "Estuary Ecosystem Restoration: Implementing and Institutionalizing Adaptive Management." Restoration Ecology 26, no. 2:360-369. PNNL-SA-124329. doi:10.1111/rec.12562
  • Fountain M.S., S.D. Branch, and G.A. Gill. 2018. Separation and Speciation of Mercury from Hanford 241-AP-107 Tank Waste Supernatant. PNNL-28067. Richland, WA: Pacific Northwest National Laboratory.
  • Gao S., P. Waller, G. Khawam, S. Attalah, M.H. Huesemann, and K.L. Ogden. 2018. "Incorporation of salinity, nitrogen, and shading stress factors into the Huesemann Algae Biomass Growth model." Algal Research 35. PNNL-SA-140554. doi:10.1016/j.algal.2018.09.021
  • Hou H., Z. Deng, J.J. Martinez, T. Fu, J.P. Duncan, G.E. Johnson, and J. Lu, et al. 2018. "A Hydropower Biological Evaluation Toolset (HBET) for Characterizing Hydraulic Conditions and Impacts of Hydro-Structures on Fish." Energies 11, no. 4:990. PNNL-SA-124812. doi:10.3390/en11040990
  • Huesemann M.H., A.R. Chavis, S.J. Edmundson, D.K. Rye, S.J. Hobbs, N. Sun, and M.S. Wigmosta. 2018. "Climate-Simulated Raceway Pond Culturing: Quantifying the Maximum Achievable Annual Biomass Productivity of Chlorella sorokiniana in the Contiguous USA." Journal of Applied Phycology 30, no. 1:287-298. PNNL-SA-124328. doi:10.1007/s10811-017-1256-6
  • Khangaonkar T.P., A. Nugraha, W. Xu, W. Long, L. Bianucci, A. Ahmed, and T.M. Mohamedali, et al. 2018. "Analysis of Hypoxia and Sensitivity to Nutrient Pollution in Salish Sea." Journal of Geophysical Research. C. (Oceans) 123, no. 7:4735-4761. PNNL-SA-135617. doi:10.1029/2017JC013650
  • Kuo L., G.A. Gill, C. Tsouris, L. Rao, H. Pan, C.M. Wai, and C.J. Janke, et al. 2018. "Temperature Dependence of Uranium and Vanadium Adsorption on Amidoxime-Based Adsorbents in Natural Seawater." ChemistrySelect 3, no. 2:843-848. PNNL-SA-126070. doi:10.1002/slct.201701895
  • Nugraha A., and T.P. Khangaonkar. 2018. "Detailed Hydrodynamic Feasibility Assessment for Leque Island and Zis a Ba Restoration Projects." Journal of Marine Science and Engineering 6, no. 4:Article No. 140. PNNL-SA-141524. doi:10.3390/jmse6040140
  • Thom R.M., S.A. Breithaupt, H.L. Diefenderfer, A.B. Borde, G.C. Roegner, G.E. Johnson, and D.L. Woodruff. 2018. "Storm-Driven Particulate Organic Matter Flux Connects a Tidal Tributary Floodplain Wetland, Mainstem River, and Estuary." Ecological Applications 28, no. 6:1420-1434. PNNL-SA-135237. doi:10.1002/eap.1759
  • Wiechert A.I., A. Ladshaw, G.A. Gill, J.R. Wood, S. Yiacoumi, and C. Tsouris. 2018. "Uranium Resource Recovery from Desalination Plant Feed and Reject Water Using Amidoxime Functionalized Adsorbent." Industrial and Engineering Chemistry Research 57, no. 50:17237-17244. PNNL-SA-140886. doi:10.1021/acs.iecr.8b04673
  • Wu W., Z. Yang, and T. Wang. 2018. "Wave Resource Characterization Using an Unstructured-grid Modeling Approach." Energies 11, no. 3:Article No. 605. PNNL-SA-132143. doi:10.3390/en11030605

2017

  • Breithaupt S.A., A.E. Copping, J. Tagestad, and J.M. Whiting. 2017. "Maritime Route Delineation using AIS Data from the Atlantic Coast of the US." The Journal of Navigation 70, no. 2:379-394. PNNL-SA-120338. doi:10.1017/S0373463316000606
  • Copping A.E., M.E. Grear, R.A. Jepsen, C. Chartrand, and A.M. Gorton. 2017. "Understanding the Potential Risk to Marine Mammals from Collision with Tidal Turbines." International Journal of Marine Energy 19. PNNL-SA-120984. doi:10.1016/j.ijome.2017.07.004
  • Edmundson S.J., M.H. Huesemann, R. Kruk, T.L. Lemmon, J.M. Billing, A.J. Schmidt, and D.B. Anderson. 2017. "Phosphorus and Nitrogen Recycle Following Algal Bio-crude Production via Continuous Hydrothermal Liquefaction." Algal Research 26. PNNL-SA-124518. doi:10.1016/j.algal.2017.07.016
  • Huesemann M.H., P. Williams, S.J. Edmundson, P.H. Chen, R. Kruk, V.I. Cullinan, and B. Crowe, et al. 2017. "The Laboratory Environmental Algae Pond Simulator (LEAPS) Photobioreactor: Validation Using Outdoor Pond Cultures of Chlorella sorokiniana and Nannochloropsis salina." Algal Research 26. PNNL-SA-123118. doi:10.1016/j.algal.2017.06.017
  • Huesemann M.H., T. Dale, A.R. Chavis, B.J. Crowe, S. Twary, A. Barry, and D.C. Valentine, et al. 2017. "Simulation of outdoor pond cultures using indoor LED-lighted and temperature-controlled raceway ponds and Phenometrics photobioreactors." Algal Research 21. PNNL-SA-117542. doi:10.1016/j.algal.2016.11.016
  • Khangaonkar T.P., A. Nugraha, S. Hinton, D.R. Michalsen, and S.H. Brown. 2017. "Sediment Transport into the Swinomish Navigation Channel, Puget Sound-Habitat Restoration versus Navigation Maintenance Needs." Journal of Marine Science and Engineering 5, no. 2:Article No. 19. PNNL-SA-125518. doi:10.3390/jmse5020019
  • Khangaonkar T.P., W. Long, and W. Xu. 2017. "Assessment of Circulation and Inter-Basin Transport in the Salish Sea including Johnstone Strait and Discovery Islands Pathways." Ocean Modelling 109. PNNL-SA-122703. doi:10.1016/j.ocemod.2016.11.004
  • Krueger K., D. Bottom, G. Hood, G.E. Johnson, K. Jones, and R.M. Thom. 2017. "An expert panel process to evaluate habitat restoration actions in the Columbia River estuary." Journal of Environmental Management 188. PNNL-SA-123489. doi:10.1016/j.jenvman.2016.11.028
  • Kuo L., H.B. Pan, C.M. Wai, M. Flicker Byers, E. Schneider, J.E. Strivens, and C.J. Janke, et al. 2017. "Investigations into the reusability of amidoxime-based polymeric adsorbents for seawater uranium extraction." Industrial and Engineering Chemistry Research 56, no. 40:11603-11611. PNNL-SA-127685. doi:10.1021/acs.iecr.7b02893
  • Ladshaw A., L. Kuo, J.E. Strivens, J.R. Wood, N.J. Schlafer, S. Yiacoumi, and C. Tsouris, et al. 2017. "Influence of Current Velocity on Uranium Adsorption from Seawater Using an Amidoxime-based Polymer Fiber Adsorbent." Industrial and Engineering Chemistry Research 56, no. 8:2205-2211. PNNL-SA-124030. doi:10.1021/acs.iecr.6b04539
  • Lammers P., M.H. Huesemann, W. Boeing, D.B. Anderson, R.G. Arnold, X. Bai, and M. Bhole, et al. 2017. "Review of the cultivation program within the National Alliance for Advanced Biofuels and Bioproducts." Algal Research 22. PNNL-SA-129222. doi:10.1016/j.algal.2016.11.021
  • Li C., S. Lee, S.E. Cade, L. Kuo, I.R. Schultz, D.K. Bhatt, and B. Prasad, et al. 2017. "Novel Interactions between Gut Microbiome and Host Drug-processing Genes Modify the Hepatic Metabolism of the Environmental Chemicals PBDEs." Drug Metabolism and Disposition 45, no. 11:1197-1214. PNNL-SA-129301. doi:10.1124/dmd.117.077024
  • Matzner S., R.E. Hull, G. Harker-Klimes, and V.I. Cullinan. 2017. "Studying fish near ocean energy devices using underwater video." In OCEANS 2017 MTS/IEEE, September 18-28, 2017, Ancorage, Alaska, 1-7. Piscataway, New Jersey:IEEE. PNNL-SA-127299.
  • Neti V.S., S. Das, S. Brown, C.J. Janke, L. Kuo, G.A. Gill, and S. Dai, et al. 2017. "Efficient Functionalization of Polyethylene Fibers for the Uranium Extraction from Seawater through Atom Transfer Radical Polymerization." Industrial and Engineering Chemistry Research 56, no. 38:10826-10832. PNNL-SA-128982. doi:10.1021/acs.iecr.7b00482
  • Pan H.B., C.M. Wai, L. Kuo, G.A. Gill, G. Tian, L. Rao, and S. Das, et al. 2017. "Bicarbonate Elution of Uranium from Amidoxime-based Polymer Adsorbents for Sequestering Uranium from Seawater." ChemistrySelect 2, no. 13:3769-3774. PNNL-SA-118924. doi:10.1002/slct.201700177
  • Truex M.J., B.D. Lee, C.D. Johnson, N. Qafoku, J.E. Szecsody, J.E. Kyle, and M.M. Tfaily, et al. 2017. Conceptual Model of Iodine Behavior in the Subsurface at the Hanford Site. PNNL-24709 Rev. 2. Richland, WA: Pacific Northwest National Laboratory.
  • Wang T., and Z. Yang. 2017. "A Modeling Study of Tidal Energy Extraction and the Associated Impact on Tidal Circulation in a Multi-inlet Bay System of Puget Sound." Renewable Energy 114, no. Part A:204-214. PNNL-SA-124782. doi:10.1016/j.renene.2017.03.049
  • Whiting J.M., T. Wang, and T.P. Khangaonkar. 2017. Hydrodynamic Model Development and Application for Restoration Alternatives Assessment - Skagit Delta Hydrodynamic Modeling Project (SHDM). PNNL-26867. Richland, WA: Pacific Northwest National Laboratory.
  • Xiong Y., N.R. Ford, K.A. Hecht, G. Roesijadi, and T. Squier. 2017. "Hydrogel Tethering Enhances Interdomain Stabilization of Single Chain Antibodies." Bioconjugate Chemistry 28, no. 11:2804-2814. PNNL-SA-117286. doi:10.1021/acs.bioconjchem.7b00512
  • Yang Z., and A.E. Copping. 2017. Marine Renewable Energy: Resource Characterization and Physical Effects. Cham:Springer International Publishing. PNNL-SA-125380. doi:10.1007/978-3-319-53536-4
  • Yang Z., V.S. Neary, T. Wang, B. Gunawanb, A.R. Dallman, and W. Wu. 2017. "A Wave Model Test Bed Study for Wave Energy Resource Characterization." Renewable Energy 114, no. Part A:132-144. PNNL-SA-122388. doi:10.1016/j.renene.2016.12.057

2016

  • Abney C.W., S. Das, R.T. Mayes, L. Kuo, J.R. Wood, G.A. Gill, and M. Piechowicz, et al. 2016. "A report on emergent uranyl binding phenomena by an amidoxime phosphonic acid co-polymer." Physical Chemistry Chemical Physics. PCCP 18, no. 34:23462-23468. PNNL-SA-120240. doi:10.1039/c6cp04772f
  • Brown S., Y. Yue, L. Kuo, N. Mehio, M. Li, G.A. Gill, and C. Tsouris, et al. 2016. "Uranium Adsorbent Fibers Prepared by Atom-Transfer Radical Polymerization (ATRP) from Poly(vinyl chloride)-co-chlorinated Poly(vinyl chloride) (PVC-co-CPVC) Fiber." Industrial and Engineering Chemistry Research 55, no. 15:4139-4148. PNNL-SA-120242. doi:10.1021/acs.iecr.5b03355
  • Bull D., D.S. Jenne, C.S. Smith, A.E. Copping, and G. Copeland. 2016. "Levelized cost of energy for a Backward Bent Duct Buoy." International Journal of Marine Energy 16. PNNL-SA-121027. doi:10.1016/j.ijome.2016.07.002
  • Chouyyok W., C.L. Warner, K.E. Mackie, M.G. Warner, G.A. Gill, and R.S. Addleman. 2016. "Nanostructured Metal Oxide Sorbents for the Collection and Recovery of Uranium from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4195-4207. PNNL-SA-113189. doi:10.1021/acs.iecr.5b03650
  • Chouyyok W., J.W. Pittman, M.G. Warner, K.M. Nell, D.C. Clubb, G.A. Gill, and R.S. Addleman. 2016. "Surface Functionalized Nanostructured Ceramic Sorbents for the Effective Collection and Recovery of Uranium from Seawater." Dalton Transactions 45, no. 28:11312-11325. PNNL-SA-114269. doi:10.1039/c6dt01318j
  • Copping A.E., S.A. Breithaupt, J.M. Whiting, M.E. Grear, J.D. Tagestad, and G.A. Shelton. 2016. "Likelihood of a Marine Vessel Accident from Wind Energy Development in the Atlantic." Wind Energy 19, no. 9:1557-1566. PNNL-SA-108588. doi:10.1002/we.1935
  • Das S., C. Tsouris, C. Zhang, J. Kim, S. Brown, Y. Oyola, and C. Janke, et al. 2016. "Enhancing Uranium Uptake by Amidoxime Adsorbent in Seawater: An investigation for optimum alkaline conditioning parameters." Industrial and Engineering Chemistry Research 55, no. 15:4294-4302. PNNL-SA-109934. doi:10.1021/acs.iecr.5b02735
  • Das S., S.S. Brown, R.T. Mayes, C.J. Janke, C. Tsouris, L. Kuo, and G.A. Gill, et al. 2016. "Novel Poly(imide dioxime) Sorbents: Development and testing for enhanced extraction of uranium from natural seawater." Chemical Engineering Journal 298. PNNL-SA-118384. doi:10.1016/j.cej.2016.04.013
  • Das S., W. Liao, M. Flicker Byers, C. Tsouris, C.J. Janke, R.T. Mayes, and E. Schneider, et al. 2016. "Alternative Alkaline Conditioning of Amidoxime Based Adsorbent for Uranium Extraction from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4303-4312. PNNL-SA-120372. doi:10.1021/acs.iecr.5b03210
  • Das S., Y. Oyola, R.T. Mayes, C.J. Janke, L. Kuo, G.A. Gill, and J.R. Wood, et al. 2016. "Extracting Uranium from Seawater: Promising AF Series Adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4110-4117. PNNL-SA-120398. doi:10.1021/acs.iecr.5b03136
  • Das S., Y. Oyola, R.T. Mayes, C.J. Janke, L. Kuo, G.A. Gill, and J.R. Wood, et al. 2016. "Extracting Uranium from Seawater: Promising AI Series Adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4103-4109. PNNL-SA-120256. doi:10.1021/acs.iecr.5b03135
  • Deng Z., A.H. Colotelo, R.S. Brown, and T.J. Carlson. 2016. "Environmental Issues Related to Conventional Hydropower." In Alternative Energy and Shale Gas Encyclopedia, edited by JH Lehr, J Keeley and TB Kingery. 404-409. Hoboken, New Jersey:John Wiley & Sons, Inc. PNNL-SA-82412. doi:10.1002/9781119066354.ch38
  • Deng Z., T.J. Carlson, G.R. Ploskey, R.S. Brown, G.E. Johnson, and A.H. Colotelo. 2016. "Experimental and numerical modeling tools for conventional hydropower systems." In Alternative Energy and Shale Gas Encyclopedia, edited by JH Lehr, J Keeley and TB Kingery. 448-464. Hoboken, New Jersey:John Wiley & Sons, Inc. PNNL-SA-90973. doi:10.1002/9781119066354.ch44
  • Diefenderfer H.L., G.E. Johnson, R.M. Thom, K.E. Buenau, L.A. Weitkamp, C.M. Woodley, and A.B. Borde, et al. 2016. "Evidence-based Evaluation of the Cumulative Effects of Ecosystem Restoration." Ecosphere 7, no. 3:e01242. PNNL-SA-104585. doi:10.1002/ecs2.1242
  • Ford N.R., K.A. Hecht, D. Hu, G. Orr, Y. Xiong, T. Squier, and G.L. Rorrer, et al. 2016. "Antigen Binding and Site-Directed Labeling of Biosilica-Immobilized Fusion Proteins Expressed in Diatoms." ACS Synthetic Biology 5, no. 3:193-199. PNNL-SA-113297. doi:10.1021/acssynbio.5b00191
  • Fu T., Z. Deng, J.P. Duncan, D. Zhou, T.J. Carlson, G.E. Johnson, and H. Hou. 2016. "Assessing Hydraulic Conditions through Francis turbines using an autonomous sensor device." Renewable Energy 99. PNNL-SA-113347. doi:10.1016/j.renene.2016.08.029
  • Gill G.A., L. Kuo, C.J. Janke, J. Park, R.T. Jeters, G.T. Bonheyo, and H. Pan, et al. 2016. "The Uranium from Seawater Program at the Pacific Northwest National Laboratory: Overview of Marine Testing, Adsorbent Characterization, Adsorbent Durability, Adsorbent Toxicity, and Deployment Studies." Industrial and Engineering Chemistry Research 55, no. 15:4264-4277. PNNL-SA-113457. doi:10.1021/acs.iecr.5b03649
  • Gill G.A., L. Kuo, J.E. Strivens, J.R. Wood, N.J. Schlafer, and E. D'Alessandro. 2016. Uranium from Seawater Marine Testing Program at the University of Miami's Broad Key Island Research Station. PNNL-25734. Richland, WA: Pacific Northwest National Laboratory.
  • Gill G.A., L. Kuo, J.E. Strivens, J.R. Wood, N.J. Schlafer, C. Tsouris, and C.J. Janke, et al. 2016. Summary of Adsorption Capacity and Adsorption Kinetics of Uranium and Other Elements on Amidoxime-based Adsorbents from Time Series Marine Testing at the Pacific Northwest National Laboratory. PNNL-25899. Richland, WA: Pacific Northwest National Laboratory.
  • Gillies K.A., S.M. Krone, J.J. Nagler, and I.R. Schultz. 2016. "A Computational Model of the Rainbow Trout Hypothalamus-Pituitary-Ovarian-Liver Axis." PLoS Computational Biology 12, no. 4:Article No. e1004874. PNWD-SA-10532. doi:10.1371/journal.pcbi.1004874
  • Harding L.B., I.R. Schultz, D.M. Da Silva, G.M. Ylitalo, D. Ragsdale, S.I. Harris, and S. Bailey, et al. 2016. "Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch)." Aquatic Toxicology 178. PNWD-SA-10556. doi:10.1016/j.aquatox.2016.07.013
  • Huesemann M.H., B.J. Crowe, P. Waller, A.R. Chavis, S.J. Hobbs, S.J. Edmundson, and M.S. Wigmosta. 2016. "A Validated Model to Predict Microalgae Growth in Outdoor Pond Cultures Subjected to Fluctuating Light Intensities and Water Temperatures." Algal Research 13. PNNL-SA-111707. doi:10.1016/j.algal.2015.11.008
  • Huesemann M.H., M.S. Wigmosta, B.J. Crowe, P. Waller, A.R. Chavis, S.J. Hobbs, and S.J. Edmundson, et al. 2016. "Estimating the Maximum Achievable Productivity in Outdoor Ponds: Microalgae Biomass Growth Modeling and Climate Simulated Culturing." In Microalgal Production for Biomass and High-Value Products, edited by SP Slocombe and JR Benemann. 113-137. Boca Raton, Florida:CRC Press. PNNL-SA-105694. doi:10.1201/b19464-6
  • Khangaonkar T., W. Long, B. Sackman, T. Mohamedali, and A.F. Hamlet. 2016. "Sensitivity of Circulation in the Skagit River Estuary to Sea Level Rise and Future Flows." Northwest Science 90, no. 1:94-118. PNNL-SA-112759. doi:10.3955/046.090.0108
  • Kuo L., C.J. Janke, J.R. Wood, J.E. Strivens, S. Das, Y. Oyola, and R.T. Mayes, et al. 2016. "Characterization and Testing of Amidoxime-Based Adsorbent Materials to Extract Uranium from Natural Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4285-4293. PNNL-SA-120241. doi:10.1021/acs.iecr.5b03267
  • Kuo L., G.A. Gill, J.E. Strivens, J.R. Wood, N.J. Schlafer, C.M. Wai, and H.B. Pan. 2016. Investigations Into the Reusability of Amidoxime-Based Polymeric Uranium Adsorbents. PNNL-25874. Richland, WA: Pacific Northwest National Laboratory.
  • Larimer C.J., E.M. Winder, R.T. Jeters, M.S. Prowant, I. Nettleship, R.S. Addleman, and G.T. Bonheyo. 2016. "A Method for Rapid Quantitative Assessment of Biofilms with Biomolecular Staining and Image Analysis." Analytical and Bioanalytical Chemistry 408, no. 3:999-1008. PNNL-SA-111904. doi:10.1007/s00216-015-9195-z
  • Li X., Z. Deng, L.T. Rauchenstein, and T.J. Carlson. 2016. "Contributed Review: Source-Localization Algorithms and Applications Using Time of Arrival and Time Difference of Arrival Measurements." Review of Scientific Instruments 87, no. 4:Article No. 041502. PNNL-SA-114716. doi:10.1063/1.4947001
  • Linley T.J., E.J. Krogstad, R.P. Mueller, G.A. Gill, and B.K. Lasorsa. 2016. "Mercury concentrations in Pacific lamprey (Entosphenus tridentatus) and sediments in the Columbia River Basin." Environmental Toxicology and Chemistry 35, no. 10:2571-2576. PNNL-SA-116607. doi:10.1002/etc.3423
  • Long W., K. Jung, Z. Yang, A.E. Copping, and Z. Deng. 2016. "Coupled Modeling of Hydrodynamics and Sound in Coastal Ocean for Renewable Ocean Energy Development." Marine Technology Society Journal 50, no. 2:27-36. PNNL-SA-114856. doi:10.4031/MTSJ.50.2.6
  • Matzner S., A.R. Maxwell, K.D. Ham, R.D. Hytnen, and J. Horne. 2016. "Observing Ocean Ecosystems with Sonar." In MTS/IEEE Oceans 2016, September 19-23, 2016, Monterey, California. Piscataway, New Jersey:IEEE. PNNL-SA-120086. doi:10.1109/OCEANS.2016.7761014
  • Pan H., L. Kuo, C.M. Wai, N. Miyamoto, R. Joshi, J.R. Wood, and J.E. Strivens, et al. 2016. "Elution of Uranium and Transition Metals from Amidoxime- Based Polymer Adsorbents for Sequestering Uranium from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4313-4320. PNNL-SA-113041. doi:10.1021/acs.iecr.5b03307
  • Park J., G.A. Gill, J.E. Strivens, L. Kuo, R.T. Jeters, A. Avila, and J.R. Wood, et al. 2016. "Effect of biofouling on the performance of amidoxime-based polymeric uranium adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4328-4338. PNNL-SA-113339. doi:10.1021/acs.iecr.5b03457
  • Park J., R.T. Jeters, L. Kuo, J.E. Strivens, G.A. Gill, N.J. Schlafer, and G.T. Bonheyo. 2016. "Potential impact of seawater uranium extraction on marine life." Industrial and Engineering Chemistry Research 55, no. 15:4278-4284. PNNL-SA-113338. doi:10.1021/acs.iecr.5b03430
  • Skalski J.R., M.A. Weiland, K.D. Ham, G.R. Ploskey, G.A. Mcmichael, A.H. Colotelo, and T.J. Carlson, et al. 2016. "Status After 5 Years of Survival Compliance Testing in the Federal Columbia River Power System (FCRPS)." North American Journal of Fisheries Management 36, no. 4:720-730. PNNL-SA-114788. doi:10.1080/02755947.2016.1165775
  • Tian B., W. Wu, Z. Yang, and Y. Zhou. 2016. "Drivers, Trends, and Potential Impacts of Long-Term Coastal Reclamation in China from 1985 to 2010." Estuarine, Coastal and Shelf Science 170. PNNL-SA-115556. doi:10.1016/j.ecss.2016.01.006
  • Wood J.R., G.A. Gill, L. Kuo, J.E. Strivens, and K. Choe. 2016. "Comparison of Analytical Methods for the Determination of Uranium in Seawater Using Inductively Coupled Plasma Mass Spectrometry." Industrial and Engineering Chemistry Research 55, no. 15:4344-4350. PNNL-SA-114038. doi:10.1021/acs.iecr.5b03680
  • Xuan J., Z. Yang, D. Huang, T. Wang, and F. Zhou. 2016. "Tidal residual current and its role in the mean flow on the Changjiang Bank." Journal of Marine Systems 154, no. Part A:66-81. PNNL-SA-109787. doi:10.1016/j.jmarsys.2015.04.005
  • Yang Z., and T. Wang. 2016. "NUMERICAL MODELS AS ENABLING TOOLS FOR TIDAL-STREAM ENERGY EXTRACTION AND ENVIRONMENTAL IMPACT ASSESSMENT." In Proceedings of the 35th International Conference on Ocean, Offshore and Arctic Engineering, June 18-24, 2016, Busan, South Korea, 6, V006T05A006, OMAE2016-54223. New York, New York:American Society of Mechanical Engineers. PNNL-SA-116734. doi:10.1115/OMAE2016-54223
  • Yang Z., S. Taraphdar, T. Wang, L. Leung, and M.E. Grear. 2016. "Uncertainty and feasibility of dynamical downscaling for modeling tropical cyclones for storm surge simulation." Natural Hazards 84, no. 2:1161-1184. PNNL-SA-119692. doi:10.1007/s11069-016-2482-y

2015

  • Attalah S., P. Waller, G. Khawam, R. Ryan, and M.H. Huesemann. 2015. "ENERGY PRODUCTIVITY OF THE HIGH VELOCITY ALGAE RACEWAY INTEGRATED DESIGN (ARID-HV)." Applied Engineering in Agriculture 31, no. 3:365-375. PNNL-SA-112937. doi:10.13031/aea.31.10209
  • Buck C., C. Hammerschmidt, K. Bowman, G.A. Gill, and W. Landing. 2015. "Flux of Total Mercury and Methylmercury to the Northern Gulf of Mexico from U.S. Estuaries." Environmental Science & Technology 49, no. 24:13992-13999. PNWD-SA-10543. doi:10.1021/acs.est.5b03538
  • Copping A.E., G. Zydlewski, and A.M. Redden. 2015. "Special Issue: Renewable Ocean Energy Development and the Environment." Estuaries and Coasts 38, no. 1:S156-S158. PNNL-SA-106884. doi:10.1007/s12237-014-9922-2
  • Copping A.E., L.A. Hanna, F.B. Van Cleve, K.M. Blake, and R.M. Anderson. 2015. "Environmental Risk Evaluation System - An Approach to Ranking Risk of Ocean Energy Development on Coastal and Estuarine Environments." Estuaries and Coasts 38, no. 1:S287-S302. PNNL-SA-102166. doi:10.1007/s12237-014-9816-3
  • Cullinan V.I., S. Matzner, and C.A. Duberstein. 2015. "Classification of Birds and Bats Using Flight Tracks." Journal of Field Ornithology 27. PNNL-SA-105515. doi:10.1016/j.ecoinf.2015.03.004
  • Deng Z., T.J. Carlson, H. Li, J. Xiao, M.J. Myjak, J. Lu, and J.J. Martinez, et al. 2015. "An injectable acoustic transmitter for juvenile salmon." Scientific Reports 5. PNNL-SA-104621. doi:10.1038/srep08111
  • Edmundson S.J., and M.H. Huesemann. 2015. "The Dark Side of Algae Cultivation: characterizing night biomass loss in three photosynthetic algae, Chlorella sorokiniana, Nannochloropsis salina and Picochlorum sp." Algal Research 12. PNNL-SA-108573. doi:10.1016/j.algal.2015.10.012
  • Estes M.G., M. Al-Hamdan, J. Ellis, C.R. Judd, D.L. Woodruff, R.M. Thom, and D. Quattrochi, et al. 2015. "A Modeling System to Assess Land Cover Land Use Change Effects on SAV habitat in the Mobile Bay Estuary." Journal of the American Water Resources Association 51, no. 2:513-536. PNWD-SA-10349. doi:10.1111/jawr.12263
  • Gill G.A., L. Kuo, J.E. Strivens, J. Park, G.T. Bonheyo, R.T. Jeters, and N.J. Schlafer, et al. 2015. Determination of Adsorption Capacity and Kinetics of Amidoxime-Based Uranium Adsorbent Braided Material in Unfiltered Seawater Using a Flume Exposure System. PNNL-24543. Richland, WA: Pacific Northwest National Laboratory.
  • Gill G.A., L. Kuo, J.E. Strivens, J.R. Wood, C. Wai, and H. Pan. 2015. Investigations into Alternative Desorption Agents for Amidoxime-Based Polymeric Uranium Adsorbents. PNNL-24378. Richland, WA: Pacific Northwest National Laboratory.
  • Gill G.A., L. Kuo, J.E. Strivens, J.R. Wood, N.J. Schlafer, C. Tsouris, and A. Ladshaw, et al. 2015. Investigations into the Effect of Current Velocity on Amidoxime-Based Polymeric Uranium Adsorbent Performance. PNNL-24996. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E. 2015. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Annual Report for 2015. PNNL-24623. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., G.R. Ploskey, N.K. Sather, and D.J. Teel. 2015. "Residence Times of Juvenile Salmon and Steelhead in Off-Channel Tidal Freshwater Habitats, Columbia River, USA." Canadian Journal of Fisheries and Aquatic Sciences 72, no. 5:684-696. PNNL-SA-101024. doi:10.1139/cjfas-2014-0085
  • Larson K.B., J.D. Tagestad, C.J. Perkins, M.R. Oster, W.M. Warwick, and S.H. Geerlofs. 2015. A Technical and Economic Optimization Approach to Exploring Offshore Renewable Energy Development in Hawaii. PNNL-24639. Richland, WA: Pacific Northwest National Laboratory.
  • Long W., Z. Yang, A.E. Copping, K. Jung, and Z. Deng. 2015. "The Development of a Finite Volume Method for Modeling Sound in Coastal Ocean Environment." In OCEANS'15 MTS/IEEE Washington, October 19-22, 2015, Washington DC, 1-6. Piscataway, New Jersey:IEEE. PNNL-SA-112403. doi:10.23919/OCEANS.2015.7404439
  • Matzner S., A. Heredia-Langner, B.G. Amidan, E.J. Boettcher, D. Lochtefeld, and T. Webb. 2015. "Standoff Human Identification Using Body Shape." In IEEE International Symposium on Technologies for Homeland Security (HST 2015), April 14-16, 2015, Waltham, Massachusetts, 1-6. Piscataway, New Jersey:IEEE. PNNL-SA-106595. doi:10.1109/THS.2015.7225300
  • Matzner S., V.I. Cullinan, and C.A. Duberstein. 2015. "Two-dimensional thermal video analysis of offshore bird and bat flight." Ecological Informatics 30. PNNL-SA-109185. doi:10.1016/j.ecoinf.2015.09.001
  • Morrison R., P.J. Peshut, R.J. West, and B.K. Lasorsa. 2015. "Mercury (Hg) speciation in coral reef systems of remote Oceania: Implications for the artisanal fisheries of Tutuila, Samoa Islands." Marine Pollution Bulletin 96, no. 1-2:41-56. PNWD-SA-10497. doi:10.1016/j.marpolbul.2015.05.049
  • Pan H., L. Kuo, J.R. Wood, J.E. Strivens, G.A. Gill, C. Janke, and C.M. Wai. 2015. "Towards Understanding KOH Conditioning of Amidoxime-based Polymer Adsorbents for Sequestering Uranium from Seawater." RSC Advances 5, no. 122:100715-100721. PNNL-SA-110707. doi:10.1039/c5ra14095a
  • Park J., R.T. Jeters, G.A. Gill, L. Kuo, and G.T. Bonheyo. 2015. Toxicity of Uranium Adsorbent Materials using the Microtox Toxicity Test. PNNL-23832. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., and A.B. Borde. 2015. "ESTUARINE HABITAT RESTORATION." In Encyclopedia of Estuaries, edited by MJ Kennish. 273-285. Amsterdam:Springer. PNNL-SA-98175. doi:10.1007/978-94-017-8801-4_78
  • Tian B., Y. Zhou, R.M. Thom, H.L. Diefenderfer, and Q. Yuan. 2015. "Detecting wetland changes in Shanghai, China using FORMOSAT and Landsat TM imagery." Journal of Hydrology 529, no. Part 1:1-10. PNNL-SA-112617. doi:10.1016/j.jhydrol.2015.07.007
  • Wang T., and Z. Yang. 2015. "Understanding the Flushing Capability of Bellingham Bay and Its Implication on Bottom Water Hypoxia." Estuarine, Coastal and Shelf Science 165. PNNL-SA-109990. doi:10.1016/j.ecss.2015.04.010
  • Wang T., Z. Yang, and A.E. Copping. 2015. "A Modeling Study of the Potential Water Quality Impacts from In-Stream Tidal Energy Extraction." Estuaries and Coasts 38, no. 1 (Supplement):173-186. PNNL-SA-97921. doi:10.1007/s12237-013-9718-9
  • Whiting J.M., and T. Khangaonkar. 2015. Hydrodynamic Modeling Analysis for Leque Island and zis a ba Restoration Feasibility Study. PNNL-24023. Richland, WA: Pacific Northwest National Laboratory.
  • Xu B., P. Li, P. Waller, and M.H. Huesemann. 2015. "Evaluation of flow mixing in an ARID-HV algal raceway using statistics of temporal and spatial distribution of fluid particles." Algal Research 9. PNNL-SA-113199. doi:10.1016/j.algal.2015.02.027
  • Xu W., and T. Khangaonkar. 2015. Temperature Model of the Pelton Round Butte Hydroelectric Project Reservoirs. . PNNL-25094. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Wang. 2015. "Modeling the Effects of Tidal Energy Extraction on Estuarine Hydrodynamics in a Stratified Estuary." Estuaries and Coasts 38, no. 1 Supplement:187-202. PNNL-SA-97325. doi:10.1007/s12237-013-9684-2
  • Yang Z., and T. Wang. 2015. "Responses of Estuarine Circulation and Salinity to the Loss of Intertidal Flats - A Modeling Study." Continental Shelf Research 111, no. Part B:159-173. PNNL-SA-111458. doi:10.1016/j.csr.2015.08.011
  • Yang Z., T. Wang, N. Voisin, and A.E. Copping. 2015. "Estuarine Response to River Flow and Sea-Level Rise under Future Climate Change and Human Development." Estuarine, Coastal and Shelf Science 156. PNNL-SA-102982. doi:10.1016/j.ecss.2014.08.015
  • Yue Y., R. Mayes, G.A. Gill, L. Kuo, J.R. Wood, A. Binder, and S. Brown, et al. 2015. "Macroporous Monoliths for Trace Metal Extraction from Seawater." RSC Advances 5, no. 62:50005-50010. PNNL-SA-110746. doi:10.1039/c5ra02131f
  • Zimmer M.M., B.E. Naes, D.G. Willingham, and J.M. Cloutier. 2015. FY15 Progress Report for PL14-Lg Radius SIMS-PD1Ea: Large Radius SIMS Support / Large Radius SIMS for Nuclear Materials Analysis and Characterization. PNNL-24781. Richland, WA: Pacific Northwest National Laboratory.

2014

  • Chen H., S.S. Cartmell, Q. Wang, T.J. Lozano, Z. Deng, H. Li, and X. Chen, et al. 2014. "Micro-battery Development for Juvenile Salmon Acoustic Telemetry System Applications." Scientific Reports 4. PNNL-SA-84994. doi:10.1038/srep03790
  • Copping A.E., and B. Polagye. 2014. Instrumentation for Monitoring around Marine Renewable Energy Converters: Workshop Final Report. PNNL-23100. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2014. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Wave Energy Devices. PNNL-23412. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., B. Southall, T.J. Carlson, J. Xu, J.J. Martinez, M.A. Weiland, and J.M. Ingraham. 2014. "200 kHz Commercial Sonar Systems Generate Lower Frequency Side Lobes Audible to Some Marine Mammals." PLoS One 9, no. 4:e95315. PNNL-SA-90862. doi:10.1371/journal.pone.0095315
  • Deng Z., J. Lu, M.J. Myjak, J.J. Martinez, C. Tian, S.J. Morris, and T.J. Carlson, et al. 2014. "Design and Implementation of a new Autonomous Sensor Fish to Support Advanced Hydropower Development." Review of Scientific Instruments 85, no. 11:115001. PNNL-SA-104430. doi:10.1063/1.4900543
  • Elliott D.C., T.R. Hart, G.G. Neuenschwander, L.J. Rotness, G. Roesijadi, A.H. Zacher, and J.K. Magnuson. 2014. "Hydrothermal Processing of Macroalgal Feedstocks in Continuous-Flow Reactors." ACS Sustainable Chemistry & Engineering 2, no. 2:207-215. PNNL-SA-97137. doi:10.1021/sc400251p
  • Fleck J., G.A. Gill, B.A. Bergamaschi, T.E. Kraus, B.D. Downing, and C.N. Alpers. 2014. "Concurrent photolytic degradation of aqueous methylmercury and dissolved organic matter." Science of the Total Environment 484. PNWD-SA-10419. doi:10.1016/j.scitotenv.2013.03.107
  • Fox A.L., E.A. Hughes, R.P. Trocine, J. Trefry, S.V. Schonberg, N.D. McTigue, and B.K. Lasorsa, et al. 2014. "Mercury in the Northeastern Chukchi Sea: Distribution patterns in seawater and sediments and biomagnification in the benthic food web." Deep-Sea Research. Part II, Topical Studies in Oceanography 102. PNNL-SA-102055. doi:10.1016/j.dsr2.2013.07.012
  • Gill G.A., L. Kuo, J.R. Wood, and C. Janke. 2014. Complete Laboratory Evaluation and Issue a Report on the Impact of Temperature on Uranium Adsorption. PNNL-23634. Richland, WA: Pacific Northwest National Laboratory.
  • Heredia-Langner A., B.G. Amidan, S. Matzner, and K.H. Jarman. 2014. "Optimization of an individual re-identification modeling process using biometric features." In Proceedings of the International Conference on Data Mining (DMIN 2014), July 21-24, 2014, Las Vegas, Nevada, edited by R Stahlbock, GM Weiss, M Abou-Nasr and H Arabnia. Athens, Georgia:CSREA Press. PNNL-SA-102023.
  • Jacobs J.M., M. Rhodes, C.W. Brown, R.R. Hood, A. Leight, W. Long, and R. Wood. 2014. "Modeling and forecasting the distribution of Vibrio vulnificus in Chesapeake Bay." Journal of Applied Microbiology 117, no. 5:1312-1327. PNNL-SA-107501. doi:10.1111/jam.12624
  • Johnson G.E. 2014. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Fiscal Year 2014 Annual Report. PNNL-23603. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., N.K. Sather, J.R. Skalski, and D. Teel. 2014. "Application of Diversity Indices to Quantify Early Life-History Diversity for Chinook Salmon." Ecological Indicators 38. PNNL-SA-93739. doi:10.1016/j.ecolind.2013.11.005
  • Kim J., C. Tsouris, Y. Oyola, C. Janke, R.T. Mayes, S. Dai, and S. Dai, et al. 2014. "Uptake of Uranium from Seawater by Amidoxime-Based Polymeric Adsorbent: Field Experiments, Modeling, and Updated Economic Assessment." Industrial and Engineering Chemistry Research 53, no. 14:6076-6083. PNNL-SA-104179. doi:10.1021/ie4039828
  • Li X., Z. Deng, Y. Sun, J.J. Martinez, T. Fu, G.A. McMichael, and T.J. Carlson. 2014. "A 3D approximate maximum likelihood solver for localization of fish implanted with acoustic transmitters." Scientific Reports 4. PNWD-SA-10355. doi:10.1038/srep07215
  • Li Y., J. Yi, H. Song, Q. Wang, Z. Yang, N.D. Kelley, and K. Lee. 2014. "On the Natural Frequency of Tidal Current Power Systems - A Discussion of Sea Testing." Applied Physics Letters 105, no. 2:Article No. 023902. PNNL-SA-100413. doi:10.1063/1.4886797
  • Meattey D.E., L. Savoy, J. Beuth, N. Pau, K. O'Brien, J. Osenkowski, and K. Regan, et al. 2014. "Elevated mercury levels in a wintering population of common eiders (Somateria mollissima) in the northeastern United States." Marine Pollution Bulletin 86, no. 1-2:229-237. PNWD-SA-10396. doi:10.1016/j.marpolbul.2014.07.015
  • Richmond M.C., J.A. Serkowski, L.L. Ebner, M. Sick, R.S. Brown, and T.J. Carlson. 2014. "Quantifying Barotrauma Risk to Juvenile Fish during Hydro-turbine Passage." Fisheries Research 154, no. 2014:152-164. PNNL-SA-94154. doi:10.1016/j.fishres.2014.01.007
  • Saito T., S. Brown, S. Chatterjee, J. Kim, C. Tsouris, R. Mayes, and L. Kuo, et al. 2014. "Uranium Recovery from Seawater: Development of Fiber Adsorbents Prepared via Atom-Transfer Radical Polymerization." Journal of Materials Chemistry A 2, no. 35:14674-14681. PNNL-SA-104178. doi:10.1039/C4TA03276D
  • Skalski J.R., M.B. Eppard, G.R. Ploskey, M.A. Weiland, T.J. Carlson, and R.L. Townsend. 2014. "Assessment of Subyearling Chinook Salmon Survival through the Federal Hydropower Projects in the Main-Stem Columbia River." North American Journal of Fisheries Management 34, no. 4:741-752. PNNL-SA-100146. doi:10.1080/02755947.2014.910577
  • Thom R.M., S.L. Southard, and A.B. Borde. 2014. "Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA." Journal of Coastal Research. JCR Fall 2014, no. 68:1-11. PNNL-SA-102122. doi:10.2112/SI68-001.1
  • Wang T., T. Khangaonkar, W. Long, and G.A. Gill. 2014. "Development of a Kelp-type Structure Module in a Coastal Ocean Model to Assess the Hydrodynamic Impact of Seawater Uranium Extraction Technology." Journal of Marine Science and Engineering 2, no. 1:81-92. PNNL-SA-100036. doi:10.3390/jmse2010081
  • Willingham D.G., B.E. Naes, A.J. Fahey, S.E. Thompson, and J.M. Cloutier. 2014. FY14 Progress Report for PL12-LaserSPec SIMS-PD08: Laser Photoionization of Sputtered Neutral atoms in PNNL SIMS and Applications in Nuclear Materials and Environmental Analyses. PNNL-23935. Richland, WA: Pacific Northwest National Laboratory.
  • Windham-Myers L., J. Fleck, J.T. Ackerman, M. Marvin-DiPasquale, C. Stricker, W.A. Heim, and P. Bachand, et al. 2014. "Mercury Cycling In Agricultural and Managed Wetlands: A Synthesis of Methylmercury Production, Hydrologic Export, and Bioaccumulation from an Integrated Field Study." Science of the Total Environment 484. PNWD-SA-9925. doi:10.1016/j.scitotenv.2014.01.033
  • Xiao J., Z. Deng, T.J. Carlson, and M.B. Eppard. 2014. "Building better microbatteries: from fundamental research to manufacturing." SPIE Newsroom March 31, 2014. PNNL-SA-101026.
  • Yang Z., and T. Wang. 2014. "Hydrodynamic Modeling Analysis to Support Nearshore Restoration Projects in a Changing Climate." Journal of Marine Science and Engineering 2, no. 1:18-32. PNWD-SA-10261. doi:10.3390/jmse2010018
  • Yang Z., T. Wang, A. Copping, and S.H. Geerlofs. 2014. "Modeling In-stream Tidal Energy Extraction and Its Potential Environmental Impacts." In Proceedings of the 10th European Wave and Tidal Energy Conference, 2013, n/a. London:European Wave and Tidal Energy Conference. PNNL-SA-98054.
  • Yang Z., T. Wang, A.E. Copping, and S.H. Geerlofs. 2014. "Modeling of In-stream Tidal Energy Development and its Potential Effects in Tacoma Narrows, Washington, USA." Ocean and Coastal Management 99. PNNL-SA-100989. doi:10.1016/j.ocecoaman.2014.02.010
  • Yang Z., T. Wang, and A. Copping. 2014. "ARRAY OPTIMIZATION FOR TIDAL ENERGY EXTRACTION IN A TIDAL CHANNEL - A NUMERICAL MODELING ANALYSIS." In Proceedings of the 2nd Marine Energy Technology Symposium (METS2014), April 15-28, 2014, Seattle, Washington. Gaithersburg, Maryland:Ocean Renewable Energy Coalition. PNNL-SA-102213.

2013

  • Brown C.W., R.R. Hood, W. Long, J.M. Jacobs, D.L. Ramers, C. Wazniak, and J.D. Wiggert, et al. 2013. "Ecological Forecasting in Chesapeake Bay: Using a Mechanistic-Empirical Modelling Approach." Journal of Marine Systems 125. PNNL-SA-106547. doi:10.1016/j.jmarsys.2012.12.007
  • Bryson A.J., C.M. Woodley, R.K. Karls, K.D. Hall, M.A. Weiland, Z. Deng, and T.J. Carlson, et al. 2013. "Comparison of 180-degree and 90-degree needle rotation to reduce wound size in PIT-injected juvenile Chinook salmon." Fisheries Research 143. PNNL-SA-91825. doi:10.1016/j.fishres.2013.02.011
  • Casper B., M.E. Smith, M.B. Halvorsen, H. Sun, T.J. Carlson, and A.N. Popper. 2013. "Effects of exposure to pile driving sounds on fish inner ear tissues." Comparative Biochemistry and Physiology. Part A: Molecular & Integrative Physiology 166, no. 2:352-360. PNWD-SA-10224. doi:10.1016/j.cbpa.2013.07.008
  • Coleman A.M., G.E. Johnson, A.B. Borde, H.L. Diefenderfer, N.K. Sather, T.E. Seiple, and J.A. Serkowski. 2013. The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Annual Report, 2012. PNNL-22405. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2013. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Ocean Current Devices - Reference Model #4. PNNL-22753. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2013. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Oscillating Water Column Wave Energy Devices. PNNL-22723. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., Z. Yang, N. Voisin, J. Richey, T. Wang, R.Y. Taira, and M. Constans, et al. 2013. Integrated Modeling and Decision-Support System for Water Management in the Puget Sound Basin: Snow Caps to White Caps. PNNL-23078. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., T.J. Carlson, T. Fu, H. Ren, J.J. Martinez, J.R. Myers, and S. Matzner, et al. 2013. "Design and implementation of a marine animal alert system to support Marine Renewable Energy." Marine Technology Society Journal 47, no. 4:113-121. PNNL-SA-94627. doi:10.4031/MTSJ.47.4.2
  • Diefenderfer H.L., G.E. Johnson, R.M. Thom, A.B. Borde, C.M. Woodley, L.A. Weitkamp, and K.E. Buenau, et al. 2013. An Evidence-Based Evaluation of the Cumulative Effects of Tidal Freshwater and Estuarine Ecosystem Restoration on Endangered Juvenile Salmon in the Columbia River: Final Report. PNNL-23037. Richland, WA: Pacific Northwest National Laboratory.
  • Hanna L.A., J.M. Whiting, and A.E. Copping. 2013. Visual Modeling for Aqua Ventus I off Monhegan Island, ME. PNNL-22982. Richland, WA: Pacific Northwest National Laboratory.
  • Hanna L.A., R.S. Butner, J.M. Whiting, and A.E. Copping. 2013. Tethys and Annex IV Progress Report for FY 2012. PNNL-21865 Tethys. Richland, WA: Pacific Northwest National Laboratory.
  • Huesemann M.H., J.M. Van Wagenen, T.W. Miller, A.R. Chavis, W.B. Hobbs, and B.J. Crowe. 2013. "A Screening Model to Predict Microalgae Biomass Growth in Photobioreactors and Raceway Ponds." Biotechnology and Bioengineering 110, no. 6:1583-1594. PNNL-SA-90592. doi:10.1002/bit.24814
  • Hughes J.S., G.E. Johnson, G.R. Ploskey, M.J. Hennen, E.S. Fischer, and S.A. Zimmerman. 2013. Optimization of Hydroacoustic Equipment Deployment at Foster Dam, 2013. PNNL-22359. Richland, WA: Pacific Northwest National Laboratory.
  • Hughes J.S., M.A. Weiland, C.M. Woodley, G.R. Ploskey, S.M. Carpenter, M.J. Hennen, and E.S. Fischer, et al. 2013. Survival and Passage of Yearling and Subyearling Chinook Salmon and Juvenile Steelhead at McNary Dam, 2012. PNNL-22788 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and N.K. Sather. 2013. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Fiscal Year 2013 Annual Report. PNNL-22757. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, J.R. Skalski, and B.A. Klatte. 2013. "Sluiceway Operations to Pass Juvenile Salmonids at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33, no. 5:1000-1012. PNNL-SA-87100. doi:10.1080/02755947.2013.822441
  • Johnson G.E., N.K. Sather, A. Storch, J. Johnson, J.R. Skalski, D.J. Teel, and T. Brewer, et al. 2013. Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2012. PNNL-22481. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., I.M. Royer, G.E. Johnson, and S.C. Tackley. 2013. "Sluiceway Operations for Adult Steelhead Downstream Passage at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33, no. 5:1013-1023. PNNL-SA-87099. doi:10.1080/02755947.2013.793629
  • Khangaonkar T., and T. Wang. 2013. "Potential alteration of fjordal circulation due to a large floating structure-Numerical investigation with application to Hood Canal basin in Puget Sound." Applied Ocean Research 39. PNNL-SA-71339. doi:10.1016/j.apor.2012.11.003
  • Kropp R.K. 2013. Review of Recent Literature Relevant to the Environmental Effects of Marine and Hydrokinetic Energy Devices; Task 2.1.3: Effects on Aquatic Organisms - Fiscal Year 2012 Progress Report. PNNL-21846. Richland, WA: Pacific Northwest National Laboratory.
  • Meduri P., H. Chen, J. Xiao, J.J. Martinez, T.J. Carlson, J. Zhang, and Z. Deng. 2013. "Tunable Electrochemical Properties of Fluorinated Graphene." Journal of Materials Chemistry A 1, no. 27:7866-7869. PNNL-SA-91948. doi:10.1039/c3ta11710c
  • Miley H.S., T.W. Bowyer, M.D. Engelmann, P.W. Eslinger, J.I. Friese, L.R. Greenwood, and D.A. Haas, et al. 2013. "Measurement of Fukushima Aerosol Debris in Sequim and Richland, WA and Ketchikan, AK." Journal of Radioanalytical and Nuclear Chemistry 296, no. 2:877-882. PNNL-SA-86800. doi:10.1007/s10967-012-2231-y
  • Ploskey G.R., G. Batten, A.W. Cushing, J.A. Kim, G.E. Johnson, J.R. Skalski, and R.L. Townsend, et al. 2013. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing through Bonneville Dam, 2011. PNNL-22178 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Pratt S.H., L.M. Arrigo, D.C. Duckworth, J.M. Cloutier, A.T. Breshears, and J.M. Schwantes. 2013. FY12 Final Report for PL10-Mod Separations-PD12: Electrochemically Modulated Separation of Plutonium from Dilute and Concentrated Dissolver Solutions for Analysis by Gamma Spectroscopy. PNNL-22539. Richland, WA: Pacific Northwest National Laboratory.
  • Sather N.K., A.B. Borde, H.L. Diefenderfer, J.A. Serkowski, A.M. Coleman, and G.E. Johnson. 2013. The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Handbook of Data Reduction Procedures, Workbooks, and Exchange Templates. PNNL-22922. Richland, WA: Pacific Northwest National Laboratory.
  • Schultz I.R., A.D. Skillman, S.T. Sloan-Evans, and D.L. Woodruff. 2013. "Domoic acid toxicokinetics in Dungeness crabs: New insights into mechanisms that regulate bioaccumulation." Aquatic Toxicology 140-141, no. 2013:77-88. PNWD-SA-10059. doi:10.1016/j.aquatox.2013.04.011
  • Schultz I.R., J.J. Nagler, P. Swanson, D.S. Wunschel, A.D. Skillman, V.L. Burnett, and D.J. Smith, et al. 2013. "Toxicokinetic, Toxicodynamic and Toxicoproteomic Aspects of Short-term Exposure to Trenbolone in Female Fish." Journal of Toxicological Sciences 136, no. 2:413-429. PNWD-SA-10184. doi:10.1093/toxsci/kft220
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.R. Ploskey, M.A. Weiland, J.S. Hughes, and C.M. Woodley, et al. 2013. Compliance Monitoring of Subyearling Chinook Salmon Smolt Survival and Passage at Bonneville Dam, Summer 2012. PNNL-22188. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.R. Ploskey, M.A. Weiland, J.S. Hughes, and C.M. Woodley, et al. 2013. Compliance Monitoring of Subyearling Chinook Salmon Survival and Passage at The Dalles Dam, Summer 2012. PNNL-22195. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, M.A. Weiland, C.M. Woodley, J.S. Hughes, and G.R. Ploskey, et al. 2013. Compliance Monitoring of Yearling and Subyearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, 2012. PNNL-22152. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., C.M. Woodley, G.R. Ploskey, J.S. Hughes, J.A. Kim, Z. Deng, and T. Fu, et al. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2010. PNNL-22177. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., C.M. Woodley, G.R. Ploskey, J.S. Hughes, M.J. Hennen, J.A. Kim, and Z. Deng, et al. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2011. PNNL-22266. Richland, WA: Pacific Northwest National Laboratory.
  • Whiting J.M., L.A. Hanna, N.L. DeChello, and A.E. Copping. 2013. Acoustic Modeling for Aqua Ventus I off Monhegan Island, ME. PNNL-22926. Richland, WA: Pacific Northwest National Laboratory.
  • Woodley C.M., E.S. Fischer, K.A. Wagner, M.A. Weiland, M.B. Eppard, and T.J. Carlson. 2013. "COMPLIANCE STUDIES: WHAT ABOUT THE FISH?." In HydroVision International Conference, July 23-26, 2014, Denver, Colorado. Tulsa, Oklahoma:HydroVision International. PNNL-SA-95784.
  • Woodruff D.L., V.I. Cullinan, A.E. Copping, and K.E. Marshall. 2013. Effects of Electromagnetic Fields on Fish and Invertebrates Task 2.1.3: Effects on Aquatic Organisms Fiscal Year 2012 Progress Report Environmental Effects of Marine and Hydrokinetic Energy. PNNL-22154. Richland, WA: Pacific Northwest National Laboratory.
  • Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of gene expression changes in human primary uroepithelial cells following 24-Hr exposures to inorganic arsenic and its methylated metabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-10052. doi:10.1002/em.21749
  • Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of gene expression changes in human primary uroepithelial cells following 24-Hr exposures to inorganic arsenic and its methylated metabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-9769. doi:10.1002/em.21749
  • Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of Gene Expression Changes in Human Primary Uroepithelial Cells Following 24-Hr Exposures to Inorganic Arsenic and ItsMethylatedMetabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-10428. doi:10.1002/em.21749
  • Yang Z., and T. Wang. 2013. "Tidal Residual Eddies and their Effect on Water Exchange in Puget Sound." Ocean Dynamics 63, no. 8:995-1009. PNNL-SA-95667. doi:10.1007/s10236-013-0635-z
  • Yang Z., T. Wang, and A.E. Copping. 2013. "Modeling Tidal Stream Energy Extraction and its Effects on Transport Processes in a Tidal Channel and Bay System Using a Three-dimensional Coastal Ocean Model." Renewable Energy 50. PNNL-SA-88183. doi:10.1016/j.renene.2012.07.024
  • Yang Z., T. Wang, L.R. Leung, K.A. Hibbard, A.C. Janetos, I.P. Kraucunas, and J.S. Rice, et al. 2013. "A modeling study of coastal inundation induced by storm surge, sea-level rise, and subsidence in the Gulf of Mexico." Natural Hazards 71, no. 3:1771-1794. PNNL-SA-94696. doi:10.1007/s11069-013-0974-6

2012

  • Anderson M.G., C. Judd, and K. Marcoe. 2012. "Rapid Characterization of Shorelines using a Georeferenced Video Mapping System." Journal of Coastal Research. JCR 28, no. 5:1289-1296. PNNL-SA-76014. doi:10.2112/JCOASTRES-D-10-00186.1
  • Borde A.B., R.M. Kaufmann, V.I. Cullinan, S.A. Zimmerman, R.M. Thom, and C.L. Wright. 2012. Lower Columbia River and Estuary Habitat Monitoring Study, 2011 - Final Report. PNNL-21128. Richland, WA: Pacific Northwest National Laboratory.
  • Borde A.B., V.I. Cullinan, H.L. Diefenderfer, R.M. Thom, R.M. Kaufmann, S.A. Zimmerman, and J. Sagar, et al. 2012. Lower Columbia River and Estuary Ecosystem Restoration Program Reference Site Study: 2011 Restoration Analysis - FINAL REPORT. PNNL-21433. Richland, WA: Pacific Northwest National Laboratory.
  • Brown R.S., B.D. Pflugrath, A.H. Colotelo, C.J. Brauner, T.J. Carlson, Z. Deng, and A. Seaburg. 2012. "Pathways of Barotrauma in Juvenile Salmonids Exposed to Simulated Hydroturbine Passage: Boyle's Law vs. Henry's Law." Fisheries Research 121-122, no. 1:43-50. PNNL-SA-83903. doi:10.1016/j.fishres.2012.01.006
  • Brown R.S., B.D. Pflugrath, T.J. Carlson, and Z. Deng. 2012. "The Effect of an Externally Attached Neutrally Buoyant Transmitter on Mortal Injury during Simulated Hydroturbine Passage." Journal of Renewable and Sustainable Energy 4, no. 1:Article No. 013107. PNNL-SA-83175. doi:10.1063/1.3682062
  • Brown R.S., T.J. Carlson, A.J. Gingerich, J.R. Stephenson, B.D. Pflugrath, A.E. Welch, and M. Langeslay, et al. 2012. "Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro-turbine passage." Transactions of the American Fisheries Society 141, no. 1:147-157. PNNL-SA-76832. doi:10.1080/00028487.2011.650274
  • Carlson T.J., J.L. Elster, M.E. Jones, B.E. Watson, A.E. Copping, M.L. Watkins, and R.A. Jepsen, et al. 2012. Assessment of Strike of Adult Killer Whales by an OpenHydro Tidal Turbine Blade. PNNL-21177. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., M.B. Halvorsen, S. Matzner, A.E. Copping, and J. Stavole. 2012. Monitoring and Mitigation Alternatives for Protection of North Atlantic Right Whales during Offshore Wind Farm Installation. PNNL-21959. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., R.S. Brown, J.R. Stephenson, B.D. Pflugrath, A.H. Colotelo, A.J. Gingerich, and P.L. Benjamin, et al. 2012. "The Influence of Tag Presence on the Mortality of Juvenile Chinook Salmon Exposed to Simulated Hydroturbine Passage: Implications for Survival Estimates and Management of Hydroelectric Facilities." North American Journal of Fisheries Management 32, no. 2:249-261. PNNL-SA-76806. doi:10.1080/02755947.2012.661384
  • Casper B., A.N. Popper, F. Matthews, T.J. Carlson, and M.B. Halvorsen. 2012. "Recovery of Barotrauma Injuries in Chinook Salmon, Oncorhynchus tshawytscha from Exposure to Pile Driving Sound." PLoS One 7, no. 6:Article No. e39593. PNWD-SA-9899. doi:10.1371/journal.pone.0039593
  • Colotelo A.H., B.D. Pflugrath, R.S. Brown, C.J. Brauner, R.P. Mueller, T.J. Carlson, and Z. Deng, et al. 2012. "The effect of rapid and sustained decompression on barotrauma in juvenile brook lamprey and Pacific lamprey: implications for passage at hydroelectric facilities." Fisheries Research 129-130. PNNL-SA-85601. doi:10.1016/j.fishres.2012.06.001
  • Copping A.E., K.M. Blake, L.A. Hanna, C.A. Brandt, J.A. Ward, J.M. Brandenberger, and G.A. Gill, et al. 2012. Evaluating Effects of Stressors from Marine and Hydrokinetic Energy. PNNL-21885. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., L.A. Hanna, R.S. Butner, T.J. Carlson, M.B. Halvorsen, C.A. Duberstein, and S. Matzner, et al. 2012. Environmental Effects of Offshore Wind Development. Fiscal Year 2012 Progress Report. PNNL-21852. Richland, WA: Pacific Northwest National Laboratory.
  • Crowe B.J., S. Attalah, S. Agrawal, P. Waller, R. Ryan, J.M. Van Wagenen, and A.R. Chavis, et al. 2012. "A comparison of Nannochloropsis salina growth performance in two outdoor pond designs: conventional raceways versus the ARID pond with superior temperature management." International Journal of Chemical Engineering 2012. PNNL-SA-84841. doi:10.1155/2012/920608
  • Deng Z., and T.J. Carlson. 2012. "Editorial: Time for green certification for all hydropower?." Journal of Renewable and Sustainable Energy 4, no. 2:Article No. 020401. PNNL-SA-86848.
  • Deng Z., J.J. Martinez, A.H. Colotelo, T.K. Abel, A.P. LeBarge, R.S. Brown, and B.D. Pflugrath, et al. 2012. "Development of External and Neutrally Buoyant Acoustic Transmitters for Juvenile Salmon Turbine Passage Evaluation." Fisheries Research 113, no. 1:94-105. PNNL-SA-79155. doi:10.1016/j.fishres.2011.08.018
  • Diefenderfer H.L., G.E. Johnson, J.R. Skalski, S.A. Breithaupt, and A.M. Coleman. 2012. "Application of the Diminishing Returns Concept in the Hydroecologic Restoration of Riverscapes." Landscape Ecology 27, no. 5:671-682. PNNL-SA-66973. doi:10.1007/s10980-012-9713-8
  • Duberstein C.A., S. Matzner, V.I. Cullinan, D.J. Virden, J.R. Myers, and A.R. Maxwell. 2012. Automated Thermal Image Processing for Detection and Classification of Birds and Bats - FY2012 Annual Report. PNNL-21911. Richland, WA: Pacific Northwest National Laboratory.
  • Geerlofs S.H., L.A. Hanna, C.R. Judd, and K.M. Blake. 2012. Regulatory Assistance, Stakeholder Outreach, and Coastal and Marine Spatial Planning Activities In Support Marine and Hydrokinetic Energy Deployment: Task 2.1.7 Permitting and Planning Fiscal Year 2012 Year-End Report. PNNL-21876. Richland, WA: Pacific Northwest National Laboratory.
  • Halvorsen M.B., B. Casper, C.M. Woodley, T.J. Carlson, and A.N. Popper. 2012. "Threshold for Onset of Injury in Chinook Salmon from Exposure to Impulsive Pile Driving Sounds." PLoS One 7, no. 6:e38968. PNWD-SA-9800. doi:10.1371/journal.pone.0038968
  • Halvorsen M.B., B. Casper, F. Matthews, T.J. Carlson, and A.N. Popper. 2012. "Effects of exposure to pile driving sounds on the lake sturgeon, Nile tilapia , and hogchoker." Royal Society of London. Proceedings B. Biological Sciences 279, no. 1748:4705-4714. PNWD-SA-9898. doi:10.1098/rspb.2012.1544
  • Harnish R.A., G.E. Johnson, G.A. McMichael, M.S. Hughes, and B.D. Ebberts. 2012. "Effect of Migration Pathway on Travel Time and Survival of Acoustic-Tagged Juvenile Salmonids in the Columbia River Estuary." Transactions of the American Fisheries Society 141, no. 2:507-519. PNNL-SA-70629. doi:10.1080/00028487.2012.670576
  • Huesemann M.H., L. Kuo, L.A. Urquhart, G.A. Gill, and G. Roesijadi. 2012. "Acetone-butanol Fermentation of Marine Macroalgae." Bioresource Technology 108. PNNL-SA-83984. doi:10.1016/j.biortech.2011.12.148
  • Janak J.M., R.S. Brown, A.H. Colotelo, B.D. Pflugrath, J.R. Stephenson, Z. Deng, and T.J. Carlson, et al. 2012. "The Effects of Neutrally Buoyant, Externally Attached Transmitters on Swimming Performance and Predator Avoidance of Juvenile Chinook Salmon." Transactions of the American Fisheries Society 141, no. 5:1424-1432. PNNL-SA-82928. doi:10.1080/00028487.2012.688915
  • Johnson G.E., and W.S. Rainey. 2012. "Eco-Design of River Fishways for Upstream Passage: Application for Hanfeng Dam, Pengxi River, China." Journal of Chongqing Normal University - Natural Science Edition 29, no. 3:104-113. PNNL-SA-85479.
  • Johnson G.E., H.L. Diefenderfer, R.M. Thom, G.C. Roegner, B.D. Ebberts, J.R. Skalski, and A.B. Borde, et al. 2012. Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010. PNNL-20296. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., M.J. Hennen, S.A. Zimmerman, G. Batten, S.M. Carpenter, Z. Deng, and T. Fu, et al. 2012. Survival and Passage of Yearling Chinook Salmon and Steelhead at The Dalles Dam, Spring 2011 - FINAL REPORT. PNNL-21826. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., W.H. Pearson, S.L. Southard, and R.P. Mueller. 2012. "Upstream Movement of Juvenile Coho Salmon in Relation to Environmental Conditions in a Culvert Test Bed." Transactions of the American Fisheries Society 141, no. 6:1520-1531. PNWD-SA-8455. doi:10.1080/00028487.2012.699013
  • Khan F., G.E. Johnson, I.M. Royer, J.S. Hughes, E.S. Fischer, D.M. Trott, and G.R. Ploskey. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Lookout Point Dam, 2010. PNNL-20362 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., G.E. Johnson, I.M. Royer, N.R. Phillips, J.S. Hughes, E.S. Fischer, and K.D. Ham, et al. 2012. Acoustic Imaging Evaluation of Juvenile Salmonid Behavior in the Immediate Forebay of the Water Temperature Control Tower at Cougar Dam, 2010. PNNL-20625 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., I.M. Royer, G.E. Johnson, and K.D. Ham. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Detroit Dam, 2011. PNNL-21577 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., B.S. Sackmann, W. Long, T. Mohamedali, and M. Roberts. 2012. "Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model." Ocean Dynamics 62, no. 9:1353-1379. PNNL-SA-89087. doi:10.1007/s10236-012-0562-4
  • Khangaonkar T., B.S. Sackmann, W. Long, T. Mohamedali, and M. Roberts. 2012. Puget Sound Dissolved Oxygen Modeling Study: Development of an Intermediate Scale Water Quality Model. PNNL-20384 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Kim T., and T. Khangaonkar. 2012. "An offline unstructured biogeochemical model (UBM) for complex estuarine and coastal environments." Environmental Modelling & Software 31, no. 1:47-63. PNNL-SA-85796. doi:10.1016/j.envsoft.2011.11.010
  • Lamborg C., C. Hammerschmidt, G.A. Gill, R.P. Mason, and S. Gichuki. 2012. "An intercomparison of procedures for the determination of total mercury in seawater and recommendations regarding mercury speciation during GEOTRACES cruises." Limnology and Oceanography 10. PNWD-SA-9802. doi:10.4319/lom.2012.10.90
  • Lasorsa B.K., G.A. Gill, and M. Horvat. 2012. "Analytical Methods for Measuring Mercury in Water, Sediment and Biota." In Mercury in the Environment: Pattern and Process, edited by MS Bank. 24-54. Berkeley, California:University of California Press. PNNL-SA-70191.
  • Li H., Z. Deng, and T.J. Carlson. 2012. "Piezoelectric materials used in underwater acoustic transducers." Sensor Letters 10, no. 3/4:679-697. PNNL-SA-84860.
  • Li H., Z. Deng, Y. Yuan, and T.J. Carlson. 2012. "Design Parameters of a Miniaturized Piezoelectric Underwater Acoustic Transmitter." Sensors 12, no. 7:9098-9109. PNNL-SA-82854. doi:10.3390/s120709098
  • Louchouarn P., L. Kuo, J.M. Brandenberger, F. Marcantonio, C.R. Garland, G.A. Gill, and V.I. Cullinan. 2012. "Pyrogenic inputs of anthropogenic Pb and Hg to sediments of the Hood Canal, Washington, in the 20th century: Source evidence from stable Pb isotopes and PAH signatures." Environmental Science & Technology 46, no. 11:5772-5781. PNWD-SA-9844. doi:10.1021/es300269t
  • Marshall K.E., E.W. Robinson, S.M. Hengel, L. Pasa-Tolic, and G. Roesijadi. 2012. "FRET Imaging of Diatoms Expressing a Biosilica-Localized Ribose Sensor." PLoS One 7, no. 3:e33771 1-8. PNNL-SA-84370. doi:10.1371/journal.pone.0033771
  • Pflugrath B.D., R.S. Brown, and T.J. Carlson. 2012. "Maximum Neutral Buoyancy Depth of Juvenile Chinook Salmon: Implications for Survival during Hydroturbine Passage." Transactions of the American Fisheries Society 141, no. 2:520-525. PNNL-SA-80256. doi:10.1080/00028487.2012.670187
  • Ploskey G.R., D.M. Faber, M.A. Weiland, and T.J. Carlson. 2012. Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at Bonneville Dam, Spring 2010. PNNL-19898 Rev. 1. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, and T.J. Carlson. 2012. Monitoring of Subyearling Chinook Salmon Survival and Passage at Bonneville Dam, Summer 2010. PNNL-20095 Rev. 1. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, and T.J. Carlson. 2012. Route-Specific Passage Proportions and Survival Rates for Fish Passing through John Day Dam, The Dalles Dam, and Bonneville Dam in 2010 and 2011. PNNL-21442. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, J.S. Hughes, C.M. Woodley, Z. Deng, T.J. Carlson, and J.A. Kim, et al. 2012. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing Through Bonneville Dam, 2010. PNNL-20835 Rev. 1. Richland, WA: Pacific Northwest National Laboratory.
  • Ren H., M.B. Halvorsen, Z. Deng, and T.J. Carlson. 2012. "An Aquatic Acoustic Metrics Interface Utility for Underwater Sound Monitoring and Analysis." Sensors 12, no. 6:7438-7450. PNNL-SA-84582. doi:10.3390/s120607438
  • Ren H., Z. Deng, T.J. Carlson, Y. Sun, T. Fu, J.J. Martinez, and S. Matzner, et al. 2012. "Localization of Southern Resident Killer Whales Using Two Star Arrays to Support Marine Renewable Energy." In OCEANS 2012 MTS/IEEE, October 14-19, 2012, Hampton Roads, Virginia. Piscataway, New Jersey:The Institute of Electrical and Electronics Engineers. PNNL-SA-90424. doi:10.1109/OCEANS.2012.6405010
  • Sather N.K., A. Storch, G.E. Johnson, D.J. Teel, J.R. Skalski, A.J. Bryson, and R.M. Kaufmann, et al. 2012. Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2011 - FINAL ANNUAL REPORT. PNNL-21194 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.E. Johnson, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dales Dam, Spring 2011. PNNL-21124. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.E. Johnson, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dalles Dam, Spring 2011. PNNL-21124 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at Bonneville Dam, Spring 2011. PNNL-21175 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at Bonneville Dam, Spring 2011. PNNL-21175. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, M.A. Weiland, C.M. Woodley, J.S. Hughes, and T.J. Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, Spring 2011. PNNL-21176 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, M.A. Weiland, C.M. Woodley, J.S. Hughes, and T.J. Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, Spring 2011. PNNL-21176. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., H.L. Diefenderfer, J. Vavrinec, and A.B. Borde. 2012. "Restoring Resiliency: Case Studies from Pacific Northwest Estuarine Eelgrass (Zostera marina L.) Ecosystems." Estuaries and Coasts 35, no. 1:78-91. PNNL-SA-68902. doi:10.1007/s12237-011-9430-6
  • Van Wagenen J.M., T.W. Miller, S.J. Hobbs, P.W. Hook, B.J. Crowe, and M.H. Huesemann. 2012. "Effects of Light and Temperature on Fatty Acid Production in Nannochloropsis Salina." Energies 5, no. 3:731 - 740. PNNL-SA-85206.
  • Vavrinec J., A.B. Borde, D.L. Woodruff, J.M. Brandenberger, R.M. Thom, C.L. Wright, and V.I. Cullinan. 2012. Annual Adaptive Management Report for Compensatory Mitigation at Keyport Lagoon: Mitigation of Pier B Development at the Bremerton Naval Facilities - Compensatory Mitigation at Keyport Lagoon - Naval Underwater Warfare Center Division - Keyport, Washington. PNNL-21147 Draft. Richland, WA: Pacific Northwest National Laboratory.
  • Wang T., and Z. Yang. 2012. "A Modeling Study of Hydrodynamic Circulation in a Fjord of the Pacific Northwest." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St. Augustine, Florida, 256-273. Reston, Virginia:American Society of Civil Engineering. PNNL-SA-86494.
  • Webb-Robertson B.M., H.W. Kreuzer, G.L. Hart, J. Ehleringer, J.B. West, J.B. West, and G.A. Gill, et al. 2012. "Bayesian Integration of Isotope Ratios for Geographic Sourcing of Castor Beans." Journal of Biomedicine and Biotechnology 2012. PNNL-SA-83058. doi:10.1155/2012/450967
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, C.M. Woodley, Z. Deng, T.J. Carlson, and J.R. Skalski, et al. 2012. Monitoring of Juvenile Subyearling Chinook Salmon Survival and Passage at John Day Dam, Summer 2010. PNNL-22014. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, C.M. Woodley, Z. Deng, T.J. Carlson, and J.R. Skalski, et al. 2012. Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at John Day Dam, Spring 2010. PNNL-22015. Richland, WA: Pacific Northwest National Laboratory.
  • Woodruff D.L., I.R. Schultz, K.E. Marshall, J.A. Ward, and V.I. Cullinan. 2012. Effects of Electromagnetic Fields on Fish and Invertebrates: Task 2.1.3: Effects on Aquatic Organisms - Fiscal Year 2011 Progress Report - Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20813 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Xu J., Z. Deng, J.J. Martinez, T.J. Carlson, J.R. Myers, and M.A. Weiland. 2012. "Broadband Acoustic Environment at a Tidal Energy Site in Puget Sound." Marine Technology Society Journal 46, no. 2:65-73. PNNL-SA-83076. doi:10.4031/MTSJ.46.2.1
  • Xu J., Z. Deng, T.J. Carlson, and B. Moore. 2012. "Target Strength of Southern Resident Killer Whales (Orcinus orca): Measurement and Modeling." Marine Technology Society Journal 46, no. 2:74-84. PNNL-SA-82872. doi:10.4031/MTSJ.46.2.2
  • Yang Z., and T. Wang. 2012. "Hydrodynamic Modeling Analysis of Tidal Wetland Restoration in Snohomish River, Washington." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St Augustine, Florida, edited by ML Spaulding, 139-155. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-84170. doi:10.1061/9780784412411.00008
  • Yang Z., T. Wang, T. Khangaonkar, and S.A. Breithaupt. 2012. "Integrated Modeling of Flood Flows and Tidal Hydrodynamics over a Coastal Floodplain." Environmental Fluid Mechanics 12, no. 1:63-80. PNWD-SA-9428. doi:10.1007/s10652-011-9214-3

2011

  • Aker P.M., A.M. Jones, and A.E. Copping. 2011. Offshore Wind Turbines Estimated Noise from Offshore Wind Turbine, Monhegan Island, Maine Addendum 2. PNNL-20286. Richland, WA: Pacific Northwest National Laboratory.
  • Breithaupt S.A., and T. Khangaonkar. 2011. "Effects of Wetland Restoration on Floodplain Hydrodynamics under Extreme Flooding Conditions." Ecological Restoration 29, no. 1-2:161-172. PNWD-SA-9752. doi:10.3368/er.29.1-2.161
  • Cada G.F., A.E. Copping, and J. Roberts. 2011. "Identifying How Marine and Hydrokinetic Devices Affect Aquatic Environments." Hydro Review April 24, 2011. PNNL-SA-78066.
  • Carlson T.J., and M.C. Richmond. 2011. "Strategies for Assessment of the Biological Performance and Design of Hydroturbines." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC. Palo Alto, California:Electric Power Research Institute (EPRI). PNNL-SA-79786.
  • Carlson T.J., G.E. Johnson, C.M. Woodley, J.R. Skalski, and A. Seaburg. 2011. Compliance Monitoring of Underwater Blasting for Rock Removal at Warrior Point, Columbia River Channel Improvement Project, 2009/2010. PNNL-20388. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., Z. Deng, J.R. Myers, S. Matzner, and A.E. Copping. 2011. Marine Animal Alert System -- Task 2.1.5.3: Development of Monitoring Technologies -- FY 2011 Progress Report. PNNL-20812. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and L.A. Hanna. 2011. Screening Analysis for the Environmental Risk Evaluation System Fiscal Year 2011 Report Environmental Effects of Offshore Wind Energy. PNNL-20962. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and S.H. Geerlofs. 2011. "The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Marine and Hydrokinetic Devices." In Proceedings of the 9th European Wave and Tidal Energy Conference, September 5-9, 2011, Southampton, United Kingdom. Southampton:EWTEC. PNNL-SA-79512.
  • Copping A.E., K.M. Blake, R.M. Anderson, L.C. Zdanski, G.A. Gill, and J.A. Ward. 2011. Screening Analysis for the Environmental Risk Evaluation System Task 2.1.1.2: Evaluating Effects of Stressors Fiscal Year 2011 Progress Report - Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20805. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., M.A. Weiland, T. Fu, T.A. Seim, B.L. Lamarche, E.Y. Choi, and T.J. Carlson, et al. 2011. "A Cabled Acoustic Telemetry System for Detecting and Tracking Juvenile Salmon: Part 2. Three-Dimensional Tracking and Passage Outcomes." Sensors 11, no. 6:5661-5676. PNNL-SA-78690. doi:10.3390/s110605661
  • Deng Z., R.S. Brown, T.J. Carlson, J.J. Martinez, A.H. Colotelo, B.D. Pflugrath, and T.K. Abel, et al. 2011. "Development of external and neutrally buoyant acoustic transmitters for turbine passage evaluation." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC, 155-164. Palo Alto, California:EPRI. PNNL-SA-79460. doi:10.2172/1057387
  • Deng Z., T.J. Carlson, D.D. Dauble, and G.R. Ploskey. 2011. "Fish Passage Assessment of an Advanced Hydropower Turbine and Conventional Turbine Using Blade-strike Modeling." Energies 4, no. 1:57-67. PNNL-SA-75408. doi:10.3390/en4010057
  • Deng Z., T.J. Carlson, J. Xu, J.J. Martinez, M.A. Weiland, R.P. Mueller, and J.R. Myers, et al. 2011. "Design and operation specifications of an active monitoring system for detecting southern resident killer whales." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81594.
  • Diefenderfer H.L., G.E. Johnson, N.K. Sather, J.R. Skalski, E.M. Dawley, A.M. Coleman, and K.G. Ostrand, et al. 2011. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2010. PNNL-20295 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., R.M. Thom, G.E. Johnson, J.R. Skalski, K.A. Vogt, B.D. Ebberts, and G.C. Roegner, et al. 2011. "A Levels-of-Evidence Approach for Assessing Cumulative Ecosystem Response to Estuary and River Restoration Programs." Ecological Restoration 29, no. 1-2:111-132. PNNL-SA-55734.
  • Duncan J.P., and T.J. Carlson. 2011. Characterization of Fish Passage Conditions through a Francis Turbine, Spillway, and Regulating Outlet at Detroit Dam, Oregon, Using Sensor Fish, 2009. PNNL-20365. Richland, WA: Pacific Northwest National Laboratory.
  • Geerlofs S.H., A.E. Copping, F.B. Van Cleve, K.M. Blake, and L.A. Hanna. 2011. Regulatory Assistance, Stakeholder Outreach, and Coastal and Marine Spatial Planning Activities in Support of Marine and Hydrokinetic Energy Deployment. PNNL-20778. Richland, WA: Pacific Northwest National Laboratory.
  • Halvorsen M.B., T.J. Carlson, and A.E. Copping. 2011. Effects of Tidal Turbine Noise on Fish Task 2.1.3.2: Effects on Aquatic Organisms: Acoustics/Noise - Fiscal Year 2011 - Progress Report - Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20787. Richland, WA: Pacific Northwest National Laboratory.
  • Halvorsen M.B., T.J. Carlson, and A.E. Copping. 2011. Effects of Tidal Turbine Noise on Fish Hearing and Tissues - Draft Final Report - Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20786. Richland, WA: Pacific Northwest National Laboratory.
  • Hook S.E., J.J. Nagler, T. Cavileer, J.S. Verducci, Y. Liu, W.L. Hayton, and I.R. Schultz. 2011. "Relationships Between the Transcriptome and Physiological Indicators of Reproduction in Female Rainbow Trout Over an Annual Cycle." Environmental Toxicology and Chemistry 30, no. 2:309-318. PNWD-SA-9258. doi:10.1002/etc.407
  • Johnson G.E., A. Storch, J.R. Skalski, A.J. Bryson, C. Mallette, A.B. Borde, and E. Van Dyke, et al. 2011. Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats of the Lower Columbia River, 2007-2010. PNNL-20083. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., J.R. Skalski, T.J. Carlson, G.R. Ploskey, M.A. Weiland, Z. Deng, and E.S. Fischer, et al. 2011. Survival and Passage of Yearling and Subyearling Chinook Salmon and Steelhead at The Dalles Dam, 2010. PNNL-20626. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., and Z. Yang. 2011. "A High Resolution Hydrodynamic Model of Puget Sound to Support Nearshore Restoration Feasibility Analysis and Design." Ecological Restoration 29, no. 1-2:173-184. PNNL-SA-70081. doi:10.3368/er.29.1-2.173
  • Khangaonkar T., Z. Yang, T. Kim, and M. Roberts. 2011. "Tidally averaged circulation in Puget Sound sub-basins: Comparison of historical data, analytical model, and numerical model." Estuarine, Coastal and Shelf Science 93, no. 4:305-319. PNNL-SA-80338. doi:10.1016/j.ecss.2011.04.016
  • Kropp R.K. 2011. Review of Recent Literature Relevant to the Environmental Effects of Marine and Hydrokinetic Energy Devices Task 2.1.3: Effects on Aquatic Organisms - Fiscal Year 2011 Progress Report Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20783. Richland, WA: Pacific Northwest National Laboratory.
  • Martinez J.J., J.R. Myers, T.J. Carlson, Z. Deng, J.S. Rohrer, and K.A. Caviggia. 2011. Design and implementation of an underwater sound recording device. PNNL-20371. Richland, WA: Pacific Northwest National Laboratory.
  • Martinez J.J., J.R. Myers, T.J. Carlson, Z. Deng, J.S. Rohrer, K.A. Caviggia, and C.M. Woodley, et al. 2011. "Design and implementation of an underwater sound recording device." Sensors 11, no. 9:8519-8535. PNNL-SA-80867. doi:10.3390/s110908519
  • Matzner S., and M.E. Jones. 2011. "Measuring Coastal Boating Noise to Assess Potential Impacts on Marine Life." Sea Technology July, no. 2011. PNNL-SA-79692.
  • Matzner S., T. Fu, H. Ren, Z. Deng, Y. Sun, and T.J. Carlson. 2011. "Operational Performance Analysis of Passive Acoustic Monitoring for Killer Whales." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81899.
  • McGraw K.A., and R.M. Thom. 2011. "Protection and Restoration: Are We Having an Effect?." Ecological Restoration 29, no. 1-2:2-7. PNNL-SA-78068.
  • Meduri P., H. Chen, X. Chen, J. Xiao, M.E. Gross, T.J. Carlson, and J. Zhang, et al. 2011. "Hybrid CFx-Ag2V4O11 as a high-energy, power density cathode for application in an underwater acoustic microtransmitter." Electrochemistry Communications 13, no. 12:1344-1348. PNNL-SA-81110. doi:10.1016/j.elecom.2011.08.006
  • Miracle A.L., and T.J. Carlson. 2011. "A Safer Passage." International Water Power & Dam Construction. PNNL-SA-77155.
  • Pearson W.H., and J.R. Skalski. 2011. "Factors affecting stranding of juvenile salmonids by wakes from ship passage in the Lower Columbia River." River Research and Applications 27, no. 7:926-936. PNNL-SA-58591. doi:10.1002/rra.1397
  • Ploskey G.R., D.M. Faber, M.A. Weiland, and T.J. Carlson. 2011. Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at Bonneville Dam, Spring 2010. PNNL-19898. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, and T.J. Carlson. 2011. Monitoring of Subyearling Chinook Salmon Survival and Passage at Bonneville Dam, Summer 2010. PNNL-20095. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, J.S. Hughes, C.M. Woodley, Z. Deng, T.J. Carlson, and J.A. Kim, et al. 2011. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing through Bonneville Dam, 2010. PNNL-20835. Richland, WA: Pacific Northwest National Laboratory.
  • Richmond M.C., J.A. Serkowski, T.J. Carlson, L.L. Ebner, M. Sick, and G.F. Cada. 2011. "Computational Fluid Dynamics Framework for Turbine Biological Performance Assessment." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC. Palo Alto, California:Electric Power Research Institute (EPRI). PNNL-SA-79735.
  • Roesijadi G., A.M. Coleman, C. Judd, F.B. Van Cleve, R.M. Thom, K.E. Buenau, and J.D. Tagestad, et al. 2011. Macroalgae Analysis A National GIS-based Analysis of Macroalgae Production Potential Summary Report and Project Plan. PNNL-21087. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., E. Haas, N.R. Evans, and G.D. Williams. 2011. "Lower Columbia River and Estuary Habitat Restoration Prioritization Framework." Ecological Restoration 29, no. 1-2:94-110. PNWD-SA-9159.
  • Thom R.M., H.L. Diefenderfer, J.E. Adkins, C. Judd, M.G. Anderson, K.E. Buenau, and A.B. Borde, et al. 2011. "Guidelines, processes and tools for coastal ecosystem restoration, with examples from the United States." Plankton & Benthos Research 5, no. Supplement:185-201. PNNL-SA-73076. doi:10.3800/pbr.5.185
  • Watanabe K.H., M.E. Andersen, N. Basu, M.J. Carvan, K.M. Crofton, K.A. King, and C. Sunol, et al. 2011. "Defining and Modeling Known Adverse Outcome Pathways: Domoic Acid and Neuronal Signaling as a Case Study." Environmental Toxicology and Chemistry 30, no. 1:9-21. PNNL-SA-68451. doi:10.1002/etc.373
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, Z. Deng, T. Fu, J.A. Kim, and G.E. Johnson, et al. 2011. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival Proportions at John Day Dam, 2009. PNNL-20766. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., Z. Deng, T.A. Seim, B.L. Lamarche, E.Y. Choi, T. Fu, and T.J. Carlson, et al. 2011. "A cabled acoustic telemetry system for detecting and tracking juvenile salmon: Part 1. Engineering design and instrumentation." Sensors 11, no. 6:5645-5660. PNNL-SA-78490. doi:10.3390/s110605645
  • Wigmosta M.S., A.M. Coleman, R. Skaggs, M.H. Huesemann, and L.J. Lane. 2011. "National Microalgae Biofuel Production Potential and Resource Demand." Water Resources Research 47. PNNL-SA-74865. doi:10.1029/2010WR009966
  • Xu J., Z. Deng, J.J. Martinez, T.J. Carlson, J.R. Myers, M.A. Weiland, and M.E. Jones. 2011. "Acoustic Environment of Admiralty Inlet: Broadband Noise Measurements." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81421.
  • Yang Z., and T. Wang. 2011. Assessment of Tidal Energy Removal Impacts on Physical Systems: Development of MHK Module and Analysis of Effects on Hydrodynamics. PNNL-20804. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., T. Khangaonkar, and T. Wang. 2011. "Use of Advanced Meteorological Model Output for Coastal Ocean Modeling in Puget Sound." International Journal of Ocean and Climate Systems 2, no. 2:101-117. PNNL-SA-80241.

2010

  • Aker P.M., A.M. Jones, and A.E. Copping. 2010. Offshore Wind Turbines - Estimated Noise from Offshore Wind Turbine, Monhegan Island, Maine: Environmental Effects of Offshore Wind Energy Development. PNNL-20015. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., A.E. Copping, and F.B. Van Cleve. 2010. Environmental Risk Evaluation System (ERES) for Offshore Wind - Mock-Up of ERES, Fiscal Year 2010 Progress Report. PNNL-20020. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., A.E. Copping, and F.B. Van Cleve. 2010. Preliminary Screening Analysis for the Environmental Risk Evaluation System: Task 2.1.1: Evaluating Effects of Stressors - Fiscal Year 2010 Progress Report: Environmental Effects of Marine and Hydrokinetic Energy. PNNL-19990. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., A.E. Copping, F.B. Van Cleve, S.D. Unwin, and E.L. Hamilton. 2010. Conceptual Model of Offshore Wind Environmental Risk Evaluation System. PNNL-19500. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., S.D. Unwin, and F.B. Van Cleve. 2010. Identification and Prioritization of Analysis Cases for Marine and Hydrokinetic Energy Risk Screening. PNNL-19535. Richland, WA: Pacific Northwest National Laboratory.
  • Brandenberger J.M., P. Louchouarn, L. Kuo, E.A. Crecelius, V.I. Cullinan, G.A. Gill, and C.R. Garland, et al. 2010. Control of Toxic Chemicals in Puget Sound, Phase 3: Study of Atmospheric Deposition of Air Toxics to the Surface of Puget Sound. PNNL-19533. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., and G.E. Johnson. 2010. Columbia River Channel Improvement Project Rock Removal Blasting: Monitoring Plan. PNNL-19076. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., and J.R. Skalski. 2010. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dalles Dam, Spring 2010. PNNL-19819. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., and M.J. Myjak. 2010. Juvenile Salmon Acoustic Telemetry System Transmitter Downsize Assessment. PNNL-19366. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and M.J. O'Toole. 2010. OES-IA Annex IV: Environmental Effects of Marine and Hydrokinetic Devices - Report from the Experts' Workshop September 27th - 28th 2010 Clontarf Castle, Dublin Ireland. PNNL-20034. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and S.H. Geerlofs. 2010. Marine and Hydrokinetic Energy Development Technical Support and General Environmental Studies Report on Outreach to Stakeholders for Fiscal Year 2009. PNNL-19081. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., G.F. Cada, J. Roberts, and M. Bevelhimer. 2010. "Accelerating Ocean Energy to the Marketplace - Environmental Research at the U.S. Department of Energy National Laboratories." In 3rd International Conference on Ocean Energy, October 6-8, 2010, Bilbao, Spain. Bilbao:Ente Vasco de la Energía (EVE) - Tecnalia. PNNL-SA-72924.
  • Copping A.E., R.M. Anderson, and F.B. Van Cleve. 2010. "Applying Risk Science and Stakeholder Engagement to Overcome Environmental Barriers to Marine and Hydrokinetic Energy Projects." In Oceans 2010: MTS/IEEE Conference Proceedings, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74526. doi:10.1109/OCEANS.2010.5664492
  • Deng Z., M.A. Weiland, T.J. Carlson, and M.B. Eppard. 2010. "Design and Instrumentation of a Measurement and Calibration System for an Acoustic Telemetry System." Sensors 10, no. 4:3090-3099. PNNL-SA-71221. doi:10.3390/s100403090
  • Deng Z., R.P. Mueller, M.C. Richmond, and G.E. Johnson. 2010. "Injury and mortality of juvenile salmon entrained in a submerged jet entering still water." North American Journal of Fisheries Management 30, no. 3:623-628. PNNL-SA-63135.
  • Deng Z., T.J. Carlson, J.P. Duncan, M.C. Richmond, and D.D. Dauble. 2010. "Use of an Autonomous Sensor to Evaluate the Biological Performance of the Advanced Turbine at Wanapum Dam." Journal of Renewable and Sustainable Energy 2, no. 5:053104. PNNL-SA-72709. doi:10.1063/1.3501336
  • Diefenderfer H.L., G.E. Johnson, N.K. Sather, J.R. Skalski, E.M. Dawley, and A.M. Coleman. 2010. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2009. PNNL-19410. Richland, WA: Pacific Northwest National Laboratory.
  • Huesemann M.H., G. Roesijadi, J. Benemann, and F.B. Metting. 2010. "Biofuels from Microalgae and Seaweeds." In Biomass to Biofuels: Strategies for Global Industries, edited by A Vertex, N Qureshi, H Yukawa, HP Blaschek. 165-184. New York, New York:John Wiley & Sons, Ltd. PNNL-SA-58682.
  • Huesemann M.H., T.S. Hausmann, B.M. Carter, J.J. Gerschler, and J.R. Benemann. 2010. "Hydrogen Generation through Indirect Biophotolysis in Batch Cultures of the Non-Heterocystous Nitrogen-Fixing Cyanobacterium Plectonema boryanum." Applied Biochemistry and Biotechnology 162, no. 1:208-220. PNNL-SA-64945.
  • Johnson G.E. 2010. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY10 Annual Report. PNNL-19940. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, G.R. Ploskey, J.S. Hughes, and E.S. Fischer. 2010. Optimization of Hydroacoustic Equipment Deployments at Lookout Point and Cougar Dams, Willamette Valley Project, 2010. PNNL-19293. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, A.J. Bryson, A. Cameron, A.M. Coleman, and C. Corbett, et al. 2010. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2009. PNNL-19440. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., T.J. Carlson, and J.R. Skalski. 2010. Compliance Monitoring of Juvenile Subyearling Chinook Salmon Survival and Passage at The Dalles Dam, Summer 2010. PNNL-20042. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., G.E. Johnson, and M.A. Weiland. 2010. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam, 2009-2010. PNNL-19615. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., Z. Yang, S.H. Geerlofs, and A. Copping. 2010. "Overland Tidal Power Generation Using Modular Tidal Prism." In Estuarine and Coastal Modeling: Proceedings of the 11th International Conference, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 466-477. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-71118. doi:10.1061/41121(388)28
  • Kim T., R.G. Labiosa, T. Khangaonkar, Z. Yang, C. Chen, J. Qi, and C. Cerco. 2010. "Development and evaluation of a coupled hydrodynamic (FVCOM) and water quality model (CE-QUAL-ICM)." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, Washington, edited by ML Spaulding, 373-388. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-69320. doi:10.1061/41121(388)23
  • Kramer V.J., M.A. Etterson, M. Hecker, C.A. Murphy, G. Roesijadi, D.J. Spade, and J.A. Spromberg, et al. 2010. "Adverse Outcome Pathways and Ecological Risk Assessment: Bridging to Population-Level Effects." Environmental Toxicology and Chemistry 30, no. 1:64-76. PNNL-SA-68173. doi:10.1002/etc.375
  • Lee J.J., and I.R. Schultz. 2010. "Sex differences in the uptake and disposition of perfluorooctanoic acid in fathead minnows after oral dosing." Environmental Science & Technology 44, no. 1:491-496. PNWD-SA-8614. doi:10.1021/es901838y
  • Matthews J.L., I.R. Schultz, M.R. Easterling, and R.L. Melnick. 2010. "Physiologically based pharmacokinetic modeling of dibromoacetic acid in F344 rats." Toxicology and Applied Pharmacology 244, no. 2:196-207. PNWD-SA-9005. doi:10.1016/j.taap.2009.12.033
  • Matzner S., A.R. Maxwell, J.R. Myers, K.A. Caviggia, J.L. Elster, M.G. Foley, and M.E. Jones, et al. 2010. "Small Vessel Contribution to Underwater Noise." In Oceans 2010 MTS/IEEE Seattle. Piscataway, Nj:Institute of Electrical and Electronics Engineers (IEEE). PNNL-SA-74289. doi:10.1109/OCEANS.2010.5663818
  • Matzner S., J.R. Myers, A.R. Maxwell, and M.E. Jones. 2010. NW-MILO Acoustic Data Collection. PNNL-19169. Richland, WA: Pacific Northwest National Laboratory.
  • McMichael G.A., M.B. Eppard, T.J. Carlson, J.A. Carter, B.D. Ebberts, R.S. Brown, and M.A. Weiland, et al. 2010. "The Juvenile Salmon Acoustic Telemetry System; A New Tool." Fisheries 35, no. 1:9-22. PNWD-SA-7687.
  • Nagler J.J., T.L. Davis, N. Modi, M.M. Vijayan, and I.R. Schultz. 2010. "Intracellular, not membrane, estrogen receptors control vitellogenin synthesis in the rainbow trout." General and Comparative Endocrinology 167, no. 2:326-330. PNWD-SA-8909. doi:10.1016/j.ygcen.2010.03.022
  • Roesijadi G., S.B. Jones, L.J. Snowden-Swan, and Y. Zhu. 2010. Macroalgae as a Biomass Feedstock: A Preliminary Analysis. PNNL-19944. Richland, WA: Pacific Northwest National Laboratory.
  • Salice C.J., T. Anderson, and G. Roesijadi. 2010. "Adaptive responses and latent costs of multigeneration cadmium exposure in parasite resistant and susceptible strains of a freshwater snail." Ecotoxicology 19, no. 8:1466-1475. PNNL-SA-68653. doi:10.1007/s10646-010-0532-x
  • Schultz I.R., D.L. Woodruff, K.E. Marshall, W.J. Pratt, and G. Roesijadi. 2010. Effects of Electromagnetic Fields on Fish and Invertebrates. PNNL-19883. Richland, WA: Pacific Northwest National Laboratory.
  • Stephenson J.R., A.J. Gingerich, R.S. Brown, B.D. Pflugrath, Z. Deng, T.J. Carlson, and M. Langeslay, et al. 2010. "Assessing barotrauma in neutrally and negatively bouyant juvenile salmonids exposed to simulated hydro-turbine passage using a mobile aquatic barotrauma laboratory." Fisheries Research 106, no. 3:271-278. PNNL-SA-72828. doi:10.1016/j.fishres.2010.08.006
  • Van Cleve F.B., and A.E. Copping. 2010. Offshore Wind Energy Permitting: A Survey of U.S. Project Developers. PNNL-20024. Richland, WA: Pacific Northwest National Laboratory.
  • Van Cleve F.B., and J.C. States. 2010. Assessment of the National Wind Coordinating Collaborative: Addressing Environmental and Siting Issues Associated with Wind Energy Development. PNNL-19971. Richland, WA: Pacific Northwest National Laboratory.
  • Wang T., Z. Yang, and T. Khangaonkar. 2010. Development of a Hydrodynamic and Transport model of Bellingham Bay in Support of Nearshore Habitat Restoration. PNNL-19347. Richland, WA: Pacific Northwest National Laboratory.
  • Ward J.A., I.R. Schultz, D.L. Woodruff, G. Roesijadi, and A.E. Copping. 2010. "Assessing the Effects of Marine and Hydrokinetic Energy Development on Marine and Estuarine Resources." In OCEANS 2010, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74186. doi:10.1109/OCEANS.2010.5664064
  • Woodruff D.L., C. Judd, R.M. Thom, N.K. Sather, and R.M. Kaufmann. 2010. Fifth Annual Report: 2008 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-5. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Khangaonkar. 2010. "Multi-scale modeling of Puget Sound using an unstructured-grid coastal ocean model: from tide flats to estuaries and coastal waters." Ocean Dynamics 60, no. 6:1621-1637. PNNL-SA-77035. doi:10.1007/s10236-010-0348-5
  • Yang Z., and T. Wang. 2010. Hydrodynamic Modeling Analysis of Union Slough Restoration Project in Snohomish River, Washington. PNNL-20076. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., K.L. Sobocinski, D.W. Heatwole, T. Khangaonkar, R.M. Thom, and R. Fuller. 2010. "Hydrodynamic and Ecological Assessment of Nearshore Restoration: A Modeling Study." Ecological Modelling 221, no. 7:1043-1053. PNNL-SA-61739. doi:10.1016/j.ecolmodel.2009.07.011
  • Yang Z., T. Khangaonkar, and T. Wang. 2010. Assessment of Energy Removal Impacts on Physical Systems: Hydrodynamic Model Domain Expansion and Refinement, and Online Dissemination of Model Results. PNNL-19882. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., T. Khangaonkar, M. Calvi, and K. Nelson. 2010. "Simulation of Cumulative Effects of Nearshore Restoration Projects on Estuarine Hydrodynamics." Ecological Modelling 221, no. 7:969-977. PNWD-SA-8277. doi:10.1016/j.ecolmodel.2008.12.006
  • Yang Z., T. Khangaonkar, R.G. Labiosa, and T. Kim. 2010. Puget Sound Dissolved Oxygen Modeling Study: Development of an Intermediate-Scale Hydrodynamic Model. PNNL-18484. Richland, WA: Pacific Northwest National Laboratory.

2009

  • Brown K.H., I.R. Schultz, and J.J. Nagler. 2009. "Lack of a heritable reproductive defect in the offspring of male rainbow trout exposed to the environmental estrogen 17alpha-ethynylestradiol." Aquatic Toxicology 91, no. 1:71-74. PNWD-SA-8529.
  • Brown R.S., T.J. Carlson, A.E. Welch, J.R. Stephenson, C.S. Abernethy, B.D. Ebberts, and M. Langeslay, et al. 2009. "Assessment of Barotrauma from Rapid Decompression of Depth-Acclimated Juvenile Chinook Salmon Bearing Radiotelemetry Transmitters." Transactions of the American Fisheries Society 138, no. 6:1285-1301. PNNL-SA-72829.
  • Diefenderfer H.L., K.L. Sobocinski, R.M. Thom, C.W. May, A.B. Borde, S.L. Southard, and J. Vavrinec, et al. 2009. "Multiscale Analysis of Restoration Priorities for Marine Shoreline Planning." Environmental Management 44, no. 4:712-731. PNWD-SA-8063. doi:10.1007/s00267-009-9298-4
  • Engelmann M.D., N.E. Ballou, R.A. Kiddy, and D. Jenson. 2009. "Analysis of Radioiodine in Ground Litter Samples Downwind of the Savannah River Site." Journal of Radioanalytical and Nuclear Chemistry 282, no. 3:825-829. PNNL-SA-65618.
  • Estes M.G., M. Al-Hamdan, R.M. Thom, D. Quattrochi, D.L. Woodruff, C. Judd, and J. Ellis, et al. 2009. "Watershed and Hydrodynamic Modeling for Evaluating the Impact of Land Use Change on Submerged Aquatic Vegetation and Seagrasses in Mobile Bay." In OCEANS 2009: MTS/IEEE Biloxi - Marine Tehcnology for Our Future: Global and Local Challenges. Piscataway, New Jersey:IEEE. PNWD-SA-8733.
  • Halvorsen M.B., T.J. Carlson, and A.N. Popper. 2009. "Assessment of Cumulative Sound Exposure Level as Criterion for Exposure of Fish to Impulsive Sound." Journal of the Acoustical Society of America 125, no. 4:Article No. 2488. PNWD-SA-10238. doi:10.1121/1.4783301
  • Huesemann M.H., and J.R. Benemann. 2009. "Biofuels from Microalgae: Review of Products, Processes and Potential, with Special Focus on Dunaliella sp." In The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology, edited by A. Ben-Amotz, J.E.W. Polle, and D.V. Subba Rao. 445-474. New Hampshire:Science Publishers. PNNL-SA-61892.
  • Huesemann M.H., T.S. Hausmann, T.J. Fortman, R.M. Thom, and V.I. Cullinan. 2009. "In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina)." Ecological Engineering 35, no. 10:1395-1404. PNNL-SA-61742.
  • Johnson G.E. 2009. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY09 Annual Report. PNNL-18907. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, E.M. Dawley, B.D. Ebberts, G.C. Roegner, and M.T. Russell, et al. 2009. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2008. PNNL-18677. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., M.C. Richmond, J.B. Hedgepeth, G.R. Ploskey, M.G. Anderson, Z. Deng, and F. Khan, et al. 2009. Smolt Responses to Hydrodynamic Conditions in Forebay Flow Nets of Surface Flow Outlets, 2007. PNNL-17387. Richland, WA: Pacific Northwest National Laboratory.
  • Judd C., K.S. Judd, T.C. Gulbransen, and R.M. Thom. 2009. Summary of Training Workshop on the Use of NASA tools for Coastal Resource Management in the Gulf of Mexico. PNNL-18326. Richland, WA: Pacific Northwest National Laboratory.
  • Kennedy A., J.A. Steevens, G.R. Lotufo, J.D. Farrar, M.R. Reiss, R.K. Kropp, and J. Doi, et al. 2009. "A comparison of acute and chronic toxicity methods for marine sediments." Marine Environmental Research 68, no. 3:118-127. PNWD-SA-8634.
  • Khan F., G.E. Johnson, and M.A. Weiland. 2009. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam 2008-2009. PNNL-18590. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, D.M. Faber, Z. Deng, G.E. Johnson, J.S. Hughes, and S.A. Zimmerman, et al. 2009. Survival Rates of Juvenile Salmonids Passing Through the Bonneville Dam and Spillway in 2008. PNNL-18748. Richland, WA: Pacific Northwest National Laboratory.
  • Richmond M.C., Z. Deng, C.A. McKinstry, R.P. Mueller, T.J. Carlson, and D.D. Dauble. 2009. "Response Relationship Between Juvenile Salmon and an Autonomous Sensor in Turbulent Flows." Fisheries Research 97, no. 1-2:134-139. PNNL-SA-51955. doi:10.1016/j.fishres.2009.01.011
  • Sather N.K., G.E. Johnson, A. Storch, D. Teel, J.R. Skalski, T.A. Jones, and E.M. Dawley, et al. 2009. Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2008. PNNL-18450. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., M.G. Anderson, D. Tyre, and C.A. Fleming. 2009. Adaptive Management for Decision Making at the Program and Project Levels of the Missouri River Recovery Program. PNNL-18261. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, Z. Deng, T. Fu, T.J. Monter, and G.E. Johnson, et al. 2009. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam with Emphasis on the Prototype Surface Flow Outlet, 2008. PNNL-18890. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., J. Kim, W.T. Nagy, and G.E. Johnson. 2009. Evaluation of Steelhead Kelt Passage into the Bonneville Dam Second Powerhouse Corner Collector Prior to the Juvenile Migration Seasons, 2007 and 2008. PNNL-18323. Richland, WA: Pacific Northwest National Laboratory.
  • Weisbrod A.V., J. Sahi, H. Segner, M.O. James, J.W. Nichols, I.R. Schultz, and S. Erhardt, et al. 2009. "The State of In Vitro Science for Use in Bioaccumulation Assessments for Fish." Environmental Toxicology and Chemistry 28, no. 1:86-96. PNNL-SA-64514. doi:10.1897/08-015.1
  • Yang Z., and T.P. Khangaonkar. 2009. "Modeling Tidal Circulation and Stratification in Skagit River Estuary Using an Unstructured Grid Ocean Model." Ocean Modelling 28, no. 1-3:34-49. (special issue). PNWD-SA-8278.
  • Yang Z., T. Khangaonkar, J.M. Chase, and T. Wang. 2009. "Puget Sound Operational Forecast System - A Real-time Predictive Tool for Marine Resource Management and Emergency Responses." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 356-372. Reston, Virginia:American Society of Civil Engineers (ASCE). PNNL-SA-71183. doi:10.1061/41121(388)22

2008

  • Bellgraph B.J., R.S. Brown, J.R. Stephenson, A.E. Welch, K.A. Deters, and T.J. Carlson. 2008. "Healing Rate of Swim Bladders in Rainbow Trout." Transactions of the American Fisheries Society 137, no. 6:1791-1794. PNNL-SA-62735. doi:10.1577/T07-167.1
  • Brown K.H., I.R. Schultz, J. Cloud, and J.J. Nagler. 2008. "Aneuploid sperm formation in rainbow trout exposed to the environmental estrogen 17 alpha-ethynylestradiol." Proceedings of the National Academy of Sciences of the United States of America 105, no. 50:19786-19791. PNWD-SA-8478.
  • Burkholder B.K., G.E. Grant, G.E. Grant, R. Haggerty, T.P. Khangaonkar, and P.J. Wampler. 2008. "Influence of hyporheic flow and geomorphology on temperature of a large, gravel-bed river, Clackamas River, Oregon, USA." Hydrological Processes 22, no. 7:941-953. PNNL-SA-59383.
  • Carlson T.J., J.P. Duncan, and Z. Deng. 2008. Data Overview for Sensor Fish Samples Acquired at Ice Harbor, John Day, and Bonneville II Dams in 2005, 2006, and 2007. PNNL-17398. Richland, WA: Pacific Northwest National Laboratory.
  • Chvala W.D., A.E. Solana, J.C. States, W.M. Warwick, M.R. Weimar, and D.R. Dixon. 2008. Renewable Energy Opportunities at White Sands Missile Range, New Mexico. PNNL-20221. Richland, WA: Pacific Northwest National Laboratory.
  • Chvala W.D., W.M. Warwick, D.R. Dixon, A.E. Solana, M.R. Weimar, J.C. States, and R.W. Reilly. 2008. Renewable Energy Opportunities at Fort Hood, Texas. PNNL-20219. Richland, WA: Pacific Northwest National Laboratory.
  • Diaz R.J., D.C. Rhoads, J.A. Blake, R.K. Kropp, and K.E. Keay. 2008. "Long-term Trends of Benthic Habitats Related to Reduction in Wastewater Discharge to Boston Harbor." Estuaries and Coasts 31, no. 6:1184-1197. PNWD-SA-8333. doi:10.1007/s12237-008-9094-z
  • Heilmayer O., J.J. DiGialleonardo, L. Qian, and G. Roesijadi. 2008. "Stress tolerance of a subtropical Crassostrea virginica population to the combined effects of temperature and salinity." Estuarine, Coastal and Shelf Science 79, no. 1:179-185. PNNL-SA-59951.
  • Hibler L.F., A.R. Maxwell, L.M. Miller, N.P. Kohn, D.L. Woodruff, M. Montes, and M.A. Moline. 2008. "Improved fine-scale transport model performance using AUV and HSI feedback in a tidally dominated system." Journal of Geophysical Research. C. (Oceans) 113. PNNL-SA-58167. doi:10.1029/2008JC004739
  • Hook S.E., A.D. Skillman, B. Gopalan, J.A. Small, and I.R. Schultz. 2008. "Gene expression profiles in rainbow trout, Onchorynchus mykiss, exposed to a simple chemical mixture." Toxicological Sciences 102, no. 1:42-60. PNNL-SA-58411. doi:10.1093/toxsci/kfm293
  • Hook S.E., M.E. Cobb, J.T. Oris, and J.W. Anderson. 2008. "Gene Sequences for Cytochromes p450 1A1 and 1A2: The Need for Biomarker Development in Sea Otters (Enhydra lutris)." Comparative Biochemistry and Physiology Part B: Biochemistry & Molecular Biology 151, no. 3:336-348. PNWD-SA-8221. doi:10.1016/j.cbpb.2008.08.003
  • Huesemann M.H. 2008. "Ocean Fertilization and Other Climate Change Mitigation Strategies: An Overview." Marine Ecology Progress Series 364. PNNL-SA-60070. doi:10.3354/meps07545
  • Huesemann M.H., and J.A. Huesemann. 2008. "Will Progress in Science and Technology Avert or Accelerate Global Collapse? A Critical Analysis and Policy Recommendations." Environment, Development and Sustainability 10, no. 6:787-825. PNNL-SA-50544. doi:10.1007/s10668-007-9085-4
  • Huesemann M.H., T.S. Hausmann, R. Bartha, M. Aksoy, J.C. Weissman, and J. Benemann. 2008. "Biomass Productivities in Wild Type and Pigment Mutant of Cyclotella sp. (Diatom)." Applied Biochemistry and Biotechnology 157, no. 3:507-526. PNNL-SA-58486.
  • Johnson G.E., and G.B. Sutherland. 2008. Proceedings of the Columbia River Estuary Conference on Ecosystem Restoration. Richland, Washington:Battelle Press. PNNL-SA-61338.
  • Johnson G.E., and H.L. Diefenderfer. 2008. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY08 Annual Report. PNNL-17811. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., B. Ebberts, A.E. Giorgi, K. Kuhn, R. Lee, J.H. Plump, and D.A. Stensby, et al. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Fish at Bonneville Dam's Second Powerhouse, Columbia River." In Proceedings of the 4th American Fisheries Society Symposium: Fisheries Bioengineering, edited by SV Amaral, D Mathur, EP Taft, 203-216. Bethesda, Maryland:American Fisheries Society. PNNL-SA-42302.
  • Johnson G.E., B.D. Ebberts, A.E. Giorgi, K. Kuhn, R.T. Lee, J.H. Plump, and D.A. Stensby, et al. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Salmonids at Bonneville Dam's Second Powerhouse, Columbia River." In Advances in Fisheries Bioengineering: 4th Fisheries Bioengineering Symposium, Bethesda, Maryland, edited by SV Amaral, D Mathur, EP Taft, 203-216. Bethesda, Maryland:American Fisheries Society. PNNL-SA-53930.
  • Johnson G.E., G.R. Ploskey, J. Hedgepeth, F. Khan, R.P. Mueller, W.T. Nagy, and M.C. Richmond, et al. 2008. "Reducing the Impacts of Hydroelectric Dams on Juvenile Anadromous Fishes: Bioengineering Evaluations Using Acoustic Imaging in the Columbia River, USA." In Dams: Impacts, Stability and Design, edited by WP Hayes & MC Barnes. 1-48. Hauppauge, New York:Nova Science Publishers. PNNL-SA-61525.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, E.M. Dawley, B.D. Ebberts, D.A. Putman, and G.C. Roegner, et al. 2008. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2007. PNNL-17437. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, B.D. Ebberts, C. Tortorici, T. Yerxa, J. Leary, and J.R. Skalski. 2008. Research, Monitoring, and Evaluation for the Federal Columbia River Estuary Program. PNNL-17300. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T.P., and Z. Yang. 2008. "DYNAMIC RESPONSE OF STREAM TEMPERATURES TO BOUNDARY AND INFLOW PERTURBATION DUE TO RESERVOIR OPERATIONS." River Research and Applications 24, no. 4:420-433. PNNL-SA-59954. doi:10.1002/rra.1088
  • Khangaonkar T.P., Z. Yang, J. Paik, and F. Sotiropoulos. 2008. "Simulation of Hydrodynamics at Stratified Reservoirs Using a Staged Modeling Approach." Journal of Coastal Research. JCR. PNNL-SA-57677.
  • Lema S., J.T. Dickey, I.R. Schultz, and P. Swanson. 2008. "Dietary exposure to 2,2,4,4-tetrabromodiphenyl ether (PBDE 47) alters thyroid status and thyroid hormone-regulated gene transcription in the pituitary and brain." Environmental Health Perspectives 116, no. 12:1694-1699. PNWD-SA-8238.
  • Li T., I.R. Schultz, D.A. Keys, J.L. Campbell, and J.W. Fisher. 2008. "Quantitative evaluation of dichloroacetic acid kinetics in human: a physiologically based pharmacokinetic modeling investigation." Toxicology 245, no. 1-2:35-48. PNWD-SA-8224. doi:10.1016/j.tox.2007.12.010
  • Mueller R.P., S.S. Southard, C.W. May, W.H. Pearson, and V.I. Cullinan. 2008. "Juvenile Coho Salmon Leaping Ability and Behavior in an Experimental Culvert Test Bed." Transactions of the American Fisheries Society 137, no. 4:941-950. PNWD-SA-7768. doi:10.1577/T06-244.1
  • Ploskey G.R., J.S. Hughes, F. Khan, J. Kim, B.L. Lamarche, G.E. Johnson, and E.Y. Choi, et al. 2008. Optimization of Concurrent Deployments of the Juvenile Salmon Acoustic Telemetry System and Other Hydroacoustic Equipment at John Day Dam. PNNL-17837. Richland, WA: Pacific Northwest National Laboratory.
  • Roegner G.C., H.L. Diefenderfer, A.B. Borde, R.M. Thom, E.M. Dawley, A.H. Whiting, and S.A. Zimmerman, et al. 2008. Protocols for Monitoring Habitat Restoration Projects in the Lower Columbia River and Estuary. PNNL-15793. Richland, WA: Pacific Northwest National Laboratory.
  • Roesijadi G., S. Rezvankhah, A. Perez-Matus, A. Mitelberg, K. Torruellas, and P.A. Van Veld. 2008. "Dietary cadmium and benzo(a)pyrene increased intestinal metallothionein expression in the fish Fundulus heteroclitus." Marine Environmental Research 67, no. 1:25-30. PNNL-SA-61951.
  • Salice C.J., T.J. Miller, and G. Roesijadi. 2008. "Demographic responses to multi-generation cadmium exposure in two strains of the freshwater gastropod, Biomphalaria glabrata." Archives of Environmental Contamination and Toxicology. PNNL-SA-61311. doi:10.1007/s00244-008-9203-9
  • Sanders R.D., K.H. Coale, G.A. Gill, A.H. Andrews, and M. Stephenson. 2008. "Recent increase in atmospheric deposition of mercury to California aquatic systems inferred from a 300-year geochronological assessment of lake sediments." Applied Geochemistry 23, no. 3:399-407. PNNL-SA-77275. doi:10.1016/j.apgeochem.2007.12.021
  • Schultz I.R., K.H. Brown, and J.J. Nagler. 2008. "Effect of parental exposure to trenbolone and brominated flame retardant BDE-47 on fertility in rainbow trout (Oncorhynchus mykiss)." Marine Environmental Research 66, no. 1:47-49. PNWD-SA-7985. doi:10.1016/j.marenvres.2008.02.018
  • Sobocinski K.L., G.E. Johnson, N.K. Sather, A. Storch, T.A. Jones, C. Mallette, and E.M. Dawley, et al. 2008. Ecology of Juvenile Salmonids in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2007. PNNL-17395. Richland, WA: Pacific Northwest National Laboratory.
  • Solana A.E., J.C. States, W.D. Chvala, M.R. Weimar, and D.R. Dixon. 2008. "Renewable Energy Opportunities for the Army." In Proceedings of the World Energy Engineering Congress. Lilburn, Georgia:Farmont Press Inc. PNNL-SA-61859.
  • Tang H., J. Paik, F. Sotiropoulos, and T.P. Khangaonkar. 2008. "Three-Dimensional Numerical Modeling of Initial Mixing of Thermal Discharges at Real-Life Configurations." Journal of Hydraulic Engineering 134, no. 9:1210-1224. PNNL-SA-59364. doi:10.1061/(ASCE)0733-9429(2008)134:9(1210)
  • Thom R.M. 2008. "A.W.D., Larkum, R.J. Orth, C.M. Duarte (eds.), 2006, Seagrasses: Biology, Ecology and Conservation, Springer, ISBN: 978-1-4020-2942-4 (hardback), US$ 99.00, 691 pages." Journal of Experimental Marine Biology and Ecology 354, no. 1:160. PNNL-SA-57379.
  • Thom R.M., S.L. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-6070. doi:10.1007/s12237-008-9082-3
  • Thom R.M., S.S. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-8093. doi:10.1007/s12237-008-9082-3
  • Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Coastal Effluent Transport: an Approach to Linking of Far-field and Near-field Models." Acta Oceanologica Sinica 27. PNNL-SA-48553.
  • Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Salt Intrusion, Intertidal Mixing, and Circulation in a Braided Estuary." In Surface Water Modeling, 52, 171-180. Boca Raton, Florida:Journal of Coastal Research. PNWD-SA-8011.

2007

  • Blanton M.L., and J.L. Specker. 2007. "The Hypothalamic-Pituitary-Thyroid (HPT) Axis in Fish and Its Role in Fish Development and Reproduction." Critical Reviews in Toxicology 37, no. 1-2:97-115. PNWD-SA-7567.
  • Brandenberger J.M., C.W. May, V.I. Cullinan, R.K. Johnston, D.E. Leisle, B. Beckwith, and G. Sherrell, et al. 2007. "Contaminant Concentrations in Storm Water Entering the Sinclair/Dyes Inlet Subasin of the Puget Sound, USA, During Storm Event and Baseflow Conditions." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26-29, 2007, 9 pages. Olympia, Washington:Puget Sound Action Team. PNNL-SA-55447.
  • Brown K.H., I.R. Schultz, and J.J. Nagler. 2007. "Reduced embryonic survival in rainbow trout resulting from paternal exposure to the environmental estrogen 17 alpha- ethynylestradiol during late sexual maturation." Reproduction 134, no. 5:659-666. PNWD-SA-8077. doi:10.1530/REP-07-0169
  • Brown R.S., T.J. Carlson, A.E. Welch, J.R. Stephenson, C.S. Abernethy, C.A. McKinstry, and M. Theriault. 2007. Assessment of Barotrauma Resulting from Rapid Decompression of Depth Acclimated Juvenile Chinook Salmon Bearing Radio Telemetry Transmitters. PNNL-16790. Richland, WA: Pacific Northwest National Laboratory.
  • Cai Y.J., J.R. Rooker, G.A. Gill, and J.P. Turner. 2007. "Bioaccumulation of mercury in pelagic fishes from the northern Gulf of Mexico." Canadian Journal of Fisheries and Aquatic Sciences 64, no. 3:458-469. PNNL-SA-77521. doi:10.1139/F07-017
  • Cullinan V.I., C.W. May, J.M. Brandenberger, C. Judd, and R.K. Johnston. 2007. "Development of An Empirical Water Quality Model for Stormwater Based on Watershed Land Use in Puget Sound." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26-29, 2007, 8 pages. Olympia, Washington:Puget Sound Action Team. PNNL-SA-55324.
  • Dauble D.D., Z. Deng, M.C. Richmond, R.A. Moursund, T.J. Carlson, C.L. Rakowski, and J.P. Duncan. 2007. Biological Assessment of the Advanced Turbine Design at Wanapum Dam, 2005. PNNL-16682. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., G.R. Guensch, M.C. Richmond, M.A. Weiland, and T.J. Carlson. 2007. "Prototype Measurements of Pressure Fluctuations in The Dalles Dam Stilling Basin." Journal of Hydraulic Research 45, no. 5:674-678. PNNL-SA-42071.
  • Deng Z., J.A. Serkowski, T. Fu, T.J. Carlson, and M.C. Richmond. 2007. Synthesis of Sensor Fish Data for Assessment of Fish Passage Conditions at Turbines, Spillways, and Bypass Facilities - Phase 1: The Dalles Dam Spillway Case Study. PNNL-17148. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., T.J. Carlson, G.R. Ploskey, M.C. Richmond, and D.D. Dauble. 2007. "Evaluation of Blade-Strike Models for Estimating the Biological Performance of Kaplan Turbines." Ecological Modelling 208, no. 2-4:165-176. PNNL-SA-48765. doi:10.1016/j.ecolmodel.2007.05.019
  • Deng Z., T.J. Carlson, J.P. Duncan, and M.C. Richmond. 2007. "Applications of the Sensor Fish Technology." Hydro Review 26, no. 5:10-14. PNNL-SA-48821.
  • Deng Z., T.J. Carlson, J.P. Duncan, and M.C. Richmond. 2007. "Six-degree-of-freedom Sensor Fish design and instrumentation." Sensors 7, no. 12:3399-3415. PNNL-SA-57777.
  • Dresser T.J., C.L. Dotson, R.K. Fisher, M.J. Graf, M.C. Richmond, C.L. Rakowski, and T.J. Carlson, et al. 2007. "Wanapum Dam Advanced Hydro Turbine Upgrade Project: Part 2 - Evaluation of Fish Passage Test Results Using Computational Fluid Dynamics." In HydroVision 2006, July 31-August 4, 2006 Portland, Oregon, USA, 14 pages. Kansas City, Missouri:HCI Publications. PNNL-SA-48822.
  • Duberstein C.A., K.D. Ham, D.D. Dauble, and G.E. Johnson. 2007. The Independent Technical Analysis Process. PNNL-16507. Richland, WA: Pacific Northwest National Laboratory.
  • Frick W.E., W.E. Frick, T.P. Khangaonkar, A.C. Sigleo, and Z. Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74, no. 1-2:1-11. PNNL-SA-49044. doi:10.1016/j.ecss.2007.02.019
  • Han S., R.D. Lehman, K. Choe, and G.A. Gill. 2007. "Chemical and physical speciation of mercury in Offatts Bayou: A seasonally anoxic bayou in Galveston Bay." Limnology and Oceanography 52, no. 4:1380-1392. PNNL-SA-77274.
  • Heim W.A., K.H. Coale, M. Stephenson, K. Choe, G.A. Gill, and C. Foe. 2007. "Spatial and Habitat-Based Variations in Total and Methyl Mercury Concentrations in Surficial Sediments in the San Francisco Bay-Delta." Environmental Science & Technology 41, no. 10:3501-3507. PNNL-SA-77539.
  • Huerta Vazquez A.I., and G.A. Gill. 2007. "Determination of the Efficiency of Mixed-Acid Digestions of Sediments." Journal of Undergraduate Research VII. PNNL-SA-51400.
  • Johnson G.E., A.B. Borde, E. Dawley, H.L. Diefenderfer, B.D. Ebberts, D.A. Putman, and G.C. Roegner, et al. 2007. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006. PNNL-16561. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and H.L. Diefenderfer. 2007. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY07 Annual Report. PNNL-16947. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, J.R. Skalski, C.L. Rakowski, M.C. Richmond, and J.A. Serkowski. 2007. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Spillway, 2006. PNNL-16458. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., J.W. Beeman, I. Duran, and A. Puls. 2007. Synthesis of Juvenile Salmonid Passage Studies at The Dalles Dam, Volume II, 2001-05. PNNL-16443. Richland, WA: Pacific Northwest National Laboratory.
  • Judd C., D.L. Woodruff, R.M. Thom, M.G. Anderson, and A.B. Borde. 2007. Restoration Prioritization Toolset: Documentation and User's Guides 2007. PNNL-17054. Richland, WA: Pacific Northwest National Laboratory.
  • Judd K.S., C. Judd, J.A. Engel-Cox, T. Gulbransen, M.G. Anderson, D.L. Woodruff, and R.M. Thom, et al. 2007. Gulf of Mexico Regional Collaborative Final Report. PNNL-17180. Richland, WA: Pacific Northwest National Laboratory.
  • McKinstry C.A., T.J. Carlson, and R.S. Brown. 2007. Derivation of Mortal Injury Metric for Studies of Rapid Decompression of Depth-Acclimated Physostomous Fish. PNNL-17080. Richland, WA: Pacific Northwest National Laboratory.
  • Moline M.A., D.L. Woodruff, and N.R. Evans. 2007. "Optical Delineation of Benthic Habitat Using an Autonomous Underwater Vehicle." Journal of Field Robotics 24, no. 6:461-471. PNNL-SA-52129. doi:10.1002/rob.20176
  • Nichols J.W., S. Erhardt, S. Dyer, M.O. James, M. Moore, K. Plotzke, and H. Segner, et al. 2007. "Use of In Vitro Absorption, Distribution, Metabolism, and Excretion (ADME) Data in Bioaccumulation Assessments for Fish." Human and Ecological Risk Assessment 13, no. 6:1164-1191. PNNL-SA-57536.
  • Rensel J.E., D.A. Kiefer, J.R. Forster, D.L. Woodruff, and N.R. Evans. 2007. "Offshore finfish mariculture in the Strait of Juan de Fuca." Suisan Sogo Kenkyu Senta Kenkyu Hokoku. Bulletin of Fisheries Research Agency 19. PNWD-SA-7990.
  • Richmond M.C., T.J. Carlson, J.A. Serkowski, C.B. Cook, J.P. Duncan, and W.A. Perkins. 2007. Characterizing the Fish Passage Environment at The Dalles Dam Spillway: 2001-2004. PNNL-16521. Richland, WA: Pacific Northwest National Laboratory.
  • Richmond M.C., Z. Deng, G.R. Guensch, H. Tritico, and W.H. Pearson. 2007. "Mean Flow and Turbulence Characteristics of a Full-Scale Spiral Corrugated Culvert with Implications to Fish Passage." Ecological Engineering 30, no. 4:333-340. PNWD-SA-7227. doi:10.1016/j.ecoleng.2007.04.011
  • Roesijadi G., S. Rezvankhah, D.M. Binninger, and H. Weissbach. 2007. "Ecdysone Induction of MsrA Protects Against Oxidative Stress in Drosophila." Biochemical and Biophysical Research Communications 354, no. 2:511-516. PNNL-SA-53363.
  • Schultz I.R., A.D. Skillman, and D.L. Woodruff. 2007. "Domoic Acid Excretion In Dungeness Crabs, Razor Clams and Mussels." Marine Environmental Research 66, no. 1:21-23. PNWD-SA-7974. doi:Stenner, Robert D
  • Schultz I.R., S.M. Reed, A.V. Pratt, and A.D. Skillman. 2007. "Quantitative oral dosing of water soluble and lipophilic contaminants in the Japanese medaka (Oryzias latipes)." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145, no. 1:86-95. PNWD-SA-7669.
  • Thom R.M., and C. Judd. 2007. "Model for Coastal Restoration." In Gulf of Mexico Regional Collaborative (GOMRC) User Group. Richland, Washington:Pacific Northwest National Laboratory. PNNL-SA-56374.
  • Vavrinec J., W.H. Pearson, N.P. Kohn, J.R. Skalski, C. Lee, K.D. Hall, and B.A. Romano, et al. 2007. Laboratory Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Material from the Columbia River. PNNL-16482. Richland, WA: Pacific Northwest National Laboratory.
  • Warnken K.W., P.H. Santschi, K.A. Roberts, and G.A. Gill. 2007. "The cycling and oxidation pathways of organic carbon in a shallow estuary along the Texas Gulf Coast." Estuarine, Coastal and Shelf Science 76, no. 1:69-84. PNNL-SA-77541. doi:10.1016/j.ecss.2007.06.010
  • Weldy C.S., and M.H. Huesemann. 2007. "Lipid Production by Dunaliella salina in Batch Culture: Effects of Nitrogen Limitation and Light Intensity." Journal of Undergraduate Research VII. PNNL-16021.
  • Whelan G., W.D. Millard, G.M. Gelston, T.P. Khangaonkar, M.A. Pelton, D.L. Strenge, and Z. Yang, et al. 2007. "Using FRAMES to Manage Environmental and Water Resources." In Proceedings of the World Environmental and Water Resources Congress 2007: Restoring our Natural Habitat, May 15-19, 2007, Tampa, Florida, USA, edited by Karen C. Kabbes. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-53354. doi:10.1061/40927(243)130
  • Woodruff D.L., N.P. Kohn, V.I. Cullinan, S.S. Southard, and J. Vavrinec. 2007. Fourth Annual Report: 2007 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-4. Richland, WA: Pacific Northwest National Laboratory.
  • Woodruff D.L., S.S. Southard, V.I. Cullinan, N.P. Kohn, M.G. Anderson, and J. Vavrinec. 2007. Third Annual Report: 2006 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-3. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T.P. Khangaonkar. 2007. Development of a Hydrodynamic Model of Puget Sound and Northwest Straits. PNNL-17161. Richland, WA: Pacific Northwest National Laboratory.

2006

  • Anderson J.W., and R.F. Lee. 2006. "Use of Biomarkers in Oil Spill Risk Assessment in the marine environment." Human and Ecological Risk Assessment 12, no. 6:1192-1222. PNWD-SA-7041.
  • Cook C.B., B. Dibrani, J.A. Serkowski, M.C. Richmond, P.S. Titzler, and G.W. Dennis. 2006. Acoustic Doppler Current Profiler Measurements in the Tailrace at John Day Dam. PNNL-15627. Richland, WA: Pacific Northwest National Laboratory.
  • Dellapenna T.M., M.A. Allison, G.A. Gill, R.D. Lehman, and K.W. Warnken. 2006. "The impact of shrimp trawling and associated sediment resuspension in mud dominated, shallow estuaries." Estuarine, Coastal and Shelf Science 69, no. 3-4:519-530. PNNL-SA-77522. doi:10.1016/j.ecss.2006.04.024
  • Deng Z., M.C. Richmond, and T.J. Carlson. 2006. Characterization of The Dalles Dam Spillbay 6 Vortex Using Surface Entrained Sensor Fish Device: Preliminary Report. PNNL-15883. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., R.M. Thom, A.B. Borde, G.C. Roegner, A.H. Whiting, G.E. Johnson, and E. Dawley, et al. 2006. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2005. PNNL-15934. Richland, WA: Pacific Northwest National Laboratory.
  • Ettesvold M.R., M.G. Foley, C.E. Willingham, P. Becker, L.F. Hibler, and M.C. Miller. 2006. Environmental Implications of the OSCAR II SSGN Kursk Submarine Accident. PNNL-13531. Richland, WA: Pacific Northwest National Laboratory.
  • Hook S.E., A.D. Skillman, J.A. Small, and I.R. Schultz. 2006. "Dose-Response Relationships in Gene Expression Profiles in Rainbow Trout, Onorhyncus mykiss Exposed to Ethynylestradiol." Marine Environmental Research 62, no. suppl.:S151-S155. PNWD-SA-7173. doi:10.1016/j.marenvres.2006.04.056
  • Hook S.E., A.D. Skillman, J.A. Small, and I.R. Schultz. 2006. "Gene expression patterns in Rainbow Trout, Oncorhynchus mykiss, exposed to a suite of model toxicants." Aquatic Toxicology 77, no. 4:372-385. PNNL-SA-45577. doi:10.1016/j.aquatox.2006.01.007
  • Hook S.E., A.D. Skillman, J.A. Small, and I.R. Schultz. 2006. "Temporal Changes in Gene Expression in Rainbow Trout Exposed to Ethynyl Estradiol." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145, no. 1:73-85. PNWD-SA-7278. doi:doi:10.1016/j.cbpc.2006.10.011
  • Huesemann M.H. 2006. "Can Advances in Science and Technology Prevent Global Warming? A Critical Review of Limitations and Challenges." Mitigation and Adaptation Strategies for Global Change 11. PNNL-SA-50511.
  • Huesemann M.H., T.J. Fortman, R.G. Riley, C.J. Thompson, Z. Wang, M.J. Truex, and B.M. Peyton. 2006. "Slow Desorption of Phenanthrene from Silica Particles: Influence of Pore Size, Pore Water, and Aging Time." In 20th Annual International Conference on Soils, Sediments, and Water: Successes and Challenges published in CONTAMINATED SOILS SEDIMENTS AND WATER, 2006, edited by Calabrase, E. J.; Kostecki, P. T.; Dragun, J., 10, 1-24. New York, New York:Springer. PNNL-SA-48083.
  • Johnson G.E. 2006. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY06 Annual Report. PNNL-16142. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and D.D. Dauble. 2006. "Surface Flow Outlets to Protect Juvenile Salmonids Passing through Hydropower Dams." Reviews in Fisheries Science 14, no. 3:213-244. PNNL-SA-50342.
  • Johnson G.E., F. Khan, J. Hedgepeth, R.P. Mueller, C.L. Rakowski, M.C. Richmond, and J.A. Serkowski, et al. 2006. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Sluiceway, 2005. PNNL-15540. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T.P., S.A. Breithaupt, and F.C. Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington - Feasibility Assessment." In 9th International Conference on Estuarine Coastal Modeling Conference, edited by ML Spaulding. New York, New York:American Society of Civil Engineering. PNNL-SA-47566.
  • Khangaonkar T.P., S.A. Breithaupt, and F.C. Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington - Feasibility Assessment." In Estaurine and Coastal Modeling Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 734-751. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-48779.
  • Kim J., W.L. Hayton, and I.R. Schultz. 2006. "Modeling the brain-pituitary-gonad axis in salmon." Marine Environmental Research 62, no. Supplement:S426-S432. PNWD-SA-7524.
  • Kohn N.P., J.M. Brandenberger, L.A. Niewolny, and R.K. Johnston. 2006. Organics Verification Study for Sinclair and Dyes Inlets, Washington. PNNL-16070. Richland, WA: Pacific Northwest National Laboratory.
  • Lee C., Z. Yang, T.P. Khangaonkar, and A. Divers. 2006. "Application of a Hydrodynamic Model for Assessing the Hydraulic Capacity and Flow Field at Willamette Falls Dam, Oregon." In Estuarine and Coastal Modeling. Proceedings of 9th International Conference held in Charleston, SC, Oct.31-Nov. 2, 2005, edited by M.L. Spaulding, 788-805. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7309.
  • Muirhead E.K., A.D. Skillman, S.E. Hook, and I.R. Schultz. 2006. "Oral Exposure of PBDE-47 in Fish: Toxicokinetics and Reproductive Effects in Japanese Medaka (Oryzias latipes) and Fathead Minnows (Pimephales promelas)." Environmental Science & Technology 40, no. 2:523-528. PNNL-SA-47665.
  • Nichols J.W., I.R. Schultz, and P.N. Fitzsimmons. 2006. "In vitro-in vivo extrapolation of quantitative hepatic biotransformation data for fish - I. A review of methods, and strategies for incorporating intrinsic clearance estimates into chemical kinetic models." Aquatic Toxicology 78, no. 1:74-90. PNNL-SA-50660.
  • Pearson W.H., J.R. Skalski, K.L. Sobocinski, M.C. Miller, G.E. Johnson, G.D. Williams, and J.A. Southard, et al. 2006. A Study of Stranding of Juvenile Salmon by Ship Wakes Along the Lower Columbia River Using a Before-and-After Design: Before-Phase Results. PNNL-15400. Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., M.C. Miller, G.D. Williams, N.P. Kohn, and J.R. Skalski. 2006. Preliminary Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Materials from the Columbia River. PNNL-15477. Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., N.P. Kohn, and J.R. Skalski. 2006. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel. PNNL-16139. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., G.E. Johnson, M.A. Weiland, F. Khan, R.P. Mueller, J.A. Serkowski, and C.L. Rakowski, et al. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams." In HydroVision 2006, 13 pages. Kansas City, Missouri:HCI Publications. PNNL-SA-48572.
  • Schultz I.R., and R.E. Shangraw. 2006. "Effect of Short-Term Drinking Water Exposure to Dichloroacetate on its Pharmacokinetics and Oral Bioavailability in Human Volunteers: A Stable Isotope Study." Toxicological Sciences 92, no. 1:42-50. PNWD-SA-7457.
  • Steinmaus K.L., J. Bowles, D.L. Woodruff, T. Donato, W.J. Rhea, W.A. Snyder, and D.R. Korwan, et al. 2006. "Evolution of a Man-Made Plume in Coastal Waters." Eos 87, no. 51:581-592. PNNL-SA-50983.
  • Whelan G., W.D. Millard, G.M. Gelston, M.A. Pelton, Z. Yang, D.L. Strenge, and C. Lee, et al. 2006. Rapid Risk Assessment: FY05 Annual Summary Report. PNNL-15697. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., H. Liu, and T.P. Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling: Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 752-767. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7307.

2005

  • Anderson J.W., S.I. Hartwell, and M.J. Hameedi. 2005. "Regional Comparisons of Coastal Sediment Contamination Detected by a Biomarker (P450 HRGS; EPA Method 4425)." Environmental Science & Technology 39, no. 1:17-23. PNWD-SA-6434.
  • Carlson T.J., and C.S. Abernethy. 2005. Pilot Study of the Effects of Simulated Turbine Passage Pressure on Juvenile Chinook Salmon Acclimated with Access to Air at Absolute Pressures Greater than Atmospheric. PNNL-15011. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., J.P. Duncan, and R.L. Johnson. 2005. Characterization of Pump Flow at the Grand Coulee Pumping Station for Fish Passage, 2004. PNNL-14998. Richland, WA: Pacific Northwest National Laboratory.
  • Deng Z., M.C. Richmond, R.P. Mueller, J.P. Duncan, and T.J. Carlson. 2005. "Laboratory study of biological response of juvenile salmon subjected to turbulent shear flows." In Proceedings of Waterpower XIV, Advancing Technology for Sustainable Energy, Austin, Texas, July 18-22, 2005, 15 pp. Kansas City, Missouri:HCI Publications. PNNL-SA-44206.
  • Deng Z., T.J. Carlson, G.R. Ploskey, and M.C. Richmond. 2005. Evaluation of Blade-Strike Models for Estimating the Biological Performance of Large Kaplan Hydro Turbines. PNNL-15370. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., C. Roegner, R.M. Thom, E.M. Dawley, A.H. Whiting, G.E. Johnson, and K.L. Sobocinski, et al. 2005. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2004. PNNL-15102. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., R.M. Thom, and K. Hofseth. 2005. "A Framework for Risk Analysis for Ecological Restoration Projects in the U.S. Army Corps of Engineers." In Economics and Ecological Risk Assessment: Applications to Watershed Management, Environmental and Ecological Risk Assessment Series, edited by Randall J. F. Bruins, Matthew T. Heberling. 57-105. Boca Raton, Florida:CRC Press. PNNL-SA-37959.
  • Evans N.R., D.L. Woodruff, and V.L. Trainer. 2005. "Development of coastal upwelling edge detection algorithms associated with harmful algal blooms off the Washington coast using sea surface temperature imagery." In Remote sensing of the coastal oceanic environment: 31 July-1 August, 2005, San Diego, California, USA ; Proceedings of SPIE--the International Society for Optical Engineering, edited by R.J. Frouin, M. Babin, Shubha Sathyendranath, 5885, 58850L. Bellingham, Washington:International Society for Optical Engineering. PNWD-SA-7036.
  • Evans N.R., G.D. Williams, R.M. Thom, and A.B. Borde. 2005. "Prioritizing Restoration Sites in the Columbia River Estuary." In Proceedings of the 25th Annual ESRI International User Conference, July 25-29, 2005, San Diego, California. Redlands, California:ESRI International. PNWD-SA-7011.
  • Gray J.E., and B.K. Lasorsa. 2005. "MERCURY SPECIATION IN SOIL SAMPLES FROM THE MARISCAL MERCURY MINE, BIG BEND NATIONAL PARK, TEXAS." Geological Society of America Bulletin 37, no. 7:439. PNWD-SA-7054.
  • Gray J.E., D.L. Fey, C.W. Holmes, and B.K. Lasorsa. 2005. "Historical deposition and fluxes of mercury in Narraguinnep Reservoir, southwestern Colorado,USA." Applied Geochemistry 20, no. 1:207-220. PNWD-SA-6600.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2005. "Leaching of BTEX from Aged Crude Oil Contaminated Model Soils: Experimental and Modeling Results." Soil & Sediment Contamination 14. PNNL-SA-44636.
  • Johnson G.E., M.E. Hanks, F. Khan, C.B. Cook, J. Hedgepeth, R.P. Mueller, and C.L. Rakowski, et al. 2005. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam in 2004. PNNL-15180. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., S.M. Anglea, N.S. Adams, and T.O. Wik. 2005. "Evaluation of a prototype surface flow bypass for juvenile salmon and steelhead at the powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." Fisheries 25, no. 1:138-151. PNWD-SA-5764.
  • Johnson G.E., S.M. Anglea, N.S. Adams, and T.O. Wik. 2005. "Evaluation of a Prototype Surface Flow Bypass for Juvenile Salmon and Steelhead at the Powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." North American Journal of Fisheries Management 25, no. 1:138-151. PNNL-SA-39906. doi:10.1577/M04-024.1
  • Khangaonkar T.P., Z. Yang, C. DeGasperi, and K. Marshall. 2005. "Modeling Hydrothermal Response of a Reservoir to Modifications at a High-Head Dam." Water International 30, no. 3:378-388. PNWD-SA-7113.
  • Lee R.F., and J.W. Anderson. 2005. "Significance of Cytochrome P450 System Responses and Levels of Bile Fluorescent Aromatic Compounds in Marine Wildlife Following Oil Spills." Marine Pollution Bulletin 50, no. 7:705-723. PNWD-SA-7005.
  • May C.W., and V.I. Cullinan. 2005. An Analysis of Microbial Pollution in the Sinclair-Dyes Inlet Watershed. PNNL-15373. Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., G.D. Williams, and J.R. Skalski. 2005. Dungeness Crab Dredging Entrainment Studies in the Lower Columbia River, 2002 - 2004: Loss Projections, Salinity Model, and Scenario Analysis. PNNL-15021. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., G.E. Johnson, A.E. Giorgi, R.L. Johnson, J.R. Stevenson, C.R. Schilt, and P.N. Johnson, et al. 2005. Synthesis of Biological Reports on Juvenile Fish Passage and Survival at Bonneville Dam through 2005. PNNL-15041. Richland, WA: Pacific Northwest National Laboratory.
  • Rakowski C.L., M.C. Richmond, J.A. Serkowski, and G.E. Johnson. 2005. Forebay Computational Fluid Dynamics Modeling for The Dalles Dam to Support Behavior Guidance System Siting Studies. PNNL-15689. Richland, WA: Pacific Northwest National Laboratory.
  • Rice C.A., W. Hood, L.M. Tear, C. Simenstad, G.D. Williams, L.L. Johnson, and B.E. Feist, et al. 2005. "Monitoring Rehabilitation in Temperate North American Estuaries." In Monitoring Stream and Watershed Restoration, edited by Philip Roni, Ed Quimby. 167-208. Bethesda, Maryland:American Fisheries Society. PNWD-SA-6423.
  • Saghir S.A., and I.R. Schultz. 2005. "Toxicokinetics and Oral Bioavailability of Halogenated Acetic Acids Mixtures in Naive and GSTzeta-Depleted Rats." Toxicological Sciences 84, no. 2:214-224. PNWD-SA-6824.
  • Thom R.M., G.D. Williams, A.B. Borde, J.A. Southard, S.L. Sargeant, D.L. Woodruff, and J.C. Laufle, et al. 2005. "Adaptively Addressing Uncertainty in Estuarine and Near Coastal Restoration Projects." Journal of Coastal Research. JCR 40, no. sp. iss.:94-108. PNNL-SA-40819.
  • Thom R.M., G.D. Williams, and H.L. Diefenderfer. 2005. "Balancing the Need to Develop Coastal Areas with the Desire for an Ecologically Functioning Coastal Environment: Is Net Ecosystem Improvement Possible?." Restoration Ecology 13, no. 1:193-203. PNWD-SA-6354. doi:10.1111/j.1526-100X.2005.00024.x
  • Weiland M.A., R.P. Mueller, T.J. Carlson, Z. Deng, and C.A. McKinstry. 2005. Characterization of Bead Trajectories Through the Draft Tube of a Turbine Physical Model. PNNL-14879. Richland, WA: Pacific Northwest National Laboratory.
  • Williams G.D., N.P. Kohn, W.H. Pearson, and J.R. Skalski. 2005. Impacts to Dungeness Crab from the Southwest Washington Littoral Drift Restoration Project. PNNL-15385. Richland, WA: Pacific Northwest National Laboratory.
  • Wunschel D.S., I.R. Schultz, A.D. Skillman, and K.L. Wahl. 2005. "Method for Detection and Quantitation of Fathead Minnow Vitellogenin (Vtg) by Liquid Chromatography and Matrix Assisted Laser Desorption/ Ionization Mass Spectrometry." Aquatic Toxicology 73. PNWD-SA-6963.
  • Yang Z., H. Liu, and T.P. Khangaonkar. 2005. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In The 9th International Conference on Estuarine and Coastal Modeling. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7228.

2004

  • Carlson T.J., and G.R. Ploskey. 2004. Comparison of Blade-Strike Modeling Results with Empirical Data. PNNL-14603. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., J.P. Duncan, T.L. Gilbride, and G. Keilman. 2004. "The Sensor Fish - Making Dams More Salmon-Friendly." Sensors Magazine 21, no. 7:31-34. PNNL-SA-41835.
  • Deng Z., M.C. Richmond, C.S. Simmons, and T.J. Carlson. 2004. Six-Degree-of-Freedom Sensor Fish Design: Governing Equations and Motion Modeling. PNNL-14779. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., S.L. Sargeant, R.M. Thom, A.B. Borde, P.F. Gayaldo, C.A. Curtis, and B.L. Court, et al. 2004. "Demonstration Dock Designed to Benefit Eelgrass Habitat Restoration (Washington)." Ecological Restoration 22, no. 2:140-141. PNWD-SA-6315.
  • Evans N.R., D.L. Woodruff, and V.L. Trainer. 2004. "Using Remotely-Sensed Sea-Surface Temperature Data to Track Movement of the Juan de Fuca Eddy in Association with Pacific Northwest Coast Harmful Algal Blooms." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, edited by T Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5801.
  • Gray J.E., M.E. Hines, P.L. Higueras, I. Adatto, and B.K. Lasorsa. 2004. "Mercury Speciation and Microbial Transformations in Mine Wastes, Stream Sediments, and Surface Waters at the Almaden Mining District, Spain." Environmental Science & Technology 38, no. 16:4285-4292. PNWD-SA-6599. doi:10.1021/es040359d
  • Guensch G.R., M.C. Richmond, H. Tritico, and W.H. Pearson. 2004. "Characterization of Turbulent Open Channel Flow in a Full-Scale Spiral Corrugated Culvert." In Critical Transitions In Water And Environmental Resources Management: Proceedings of the World Water and Environmental Resources Congress, edited by G Sehlke, DF Hayes and DK Stevens. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-40895. doi:10.1061/40737(2004)183
  • Huesemann M.H. 2004. "Biodegradation and Bioremediation of Petroleum Pollutants in Soil." In Applied Bioremediation and Phytoremediation, edited by A. Singh, O.P. Ward. 13-34. Berlin Heidelberg:Springer Verlag. PNNL-SA-39097.
  • Huesemann M.H. 2004. "The Failure of Eco-Efficiency to Guarantee Sustainability: Future Challenges for Industrial Ecology." Environmental Progress 23, no. 4:264-270. PNNL-SA-42241.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2004. "Does Bioavailability Limit Biodegradability? A Comparison of Hydrocarbon Biodegradation and Desorption Rates in Aged Soils." Biodegradation 15, no. 4:261-274. PNNL-SA-40755.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2004. "Reduction of Toxicity and PAH Bioaccumulation Potential During Bioremediation of Petroleum Contaminated Soils." In The Seventh International In Situ and On-Site Bioremediation Symposium, edited by V Magar and ME Kelley, Paper No. J-05. Columbus, Ohio:Battelle Press. PNNL-SA-40756.
  • Huesemann M.H., T.S. Hausmann, T.J. Fortman, R.M. Thom, E.A. Foote, and E.A. Foote. 2004. "Using Eelgrass (Zostera marina) for Phytoremediation of PAH-Contaminated Marine Sediments." In The Seventh International In Situ and On-Site Bioremediation Symposium, edited by VS Magar and ME Kelley, Paper No. N-14. Columbus, Ohio:Battelle Press. PNWD-SA-6360.
  • Johnson G.E., J. Hedgepeth, J.R. Skalski, and A.E. Giorgi. 2004. "A Markov Chain Analysis of Fish Movements to Determine Entrainment Zones." Fisheries Research 69, no. 3:349-358. PNWD-SA-6170.
  • Johnson G.E., J. Hedgepeth, J.R. Skalski, and A.E. Giorgi. 2004. "A Markov chain analysis of fish movements to determine entrainment zones." Fisheries Research 69, no. 3:349-358. PNNL-SA-36658.
  • Keys D.A., I.R. Schultz, D.A. Mahle, and J.W. Fisher. 2004. "A Quantitative Description of Suicide Inhibition of Dichloroacetic Acid in Rats and Mice." Toxicological Sciences 82, no. 2:381-393. PNWD-SA-6816.
  • Kohn N.P., and N.R. Evans. 2004. Year 6 Post-Remediation Biomonitoring and Phase II Source Investigation at the United Heckathorn Superfund Site, Richmond, California. PNNL-14596. Richland, WA: Pacific Northwest National Laboratory.
  • Kohn N.P., M.C. Miller, J.M. Brandenberger, and R.K. Johnston. 2004. Metals Verficiation Study for Sinclair and Dyes Inlets,Washington. PNNL-14872. Richland, WA: Pacific Northwest National Laboratory.
  • Kropp R.K. 2004. Review of Deep-Sea Ecology and Monitoring as They Relate to Deep-Sea Oil and Gas Operations. PNNL-14540. Richland, WA: Pacific Northwest National Laboratory.
  • Malins D.C., J.J. Stegeman, J.W. Anderson, P.M. Johnson, J. Gold, and K.M. Anderson. 2004. "Structural Changes in Gill DNA Reveal the Effects of Contaminants on Puget Sound Fish." Environmental Health Perspectives 112, no. 5:511-515. PNWD-SA-6480.
  • May C.W., M.C. Miller, and J.A. Southard. 2004. An Analysis of Stream Culvert Fish Passage on the Navy Railroad Line between Bremerton and Shelton, Washington. PNNL-14530. Richland, WA: Pacific Northwest National Laboratory.
  • Moursund R.A., and T.J. Carlson. 2004. Turbine Imaging Technology Assessment. PNNL-14759. Richland, WA: Pacific Northwest National Laboratory.
  • Neff J.M., P.D. Boehm, R.K. Kropp, W.A. Stubblefield, and D.S. Page. 2004. "Monitoring Recovery of Prince William Sound, Alaska, Following the Exxon Valdez Oil Spill: Bioavailability of PAH in Offshore Sediments." In 2005 International Oil Spill Conference prevention, preparedness, response, and restoration: May 15-19, 2005, Miami Beach Convention Center, Miami Beach, Florida, 9562-9568. Washington, Dc:American Petroleum Institute. PNWD-SA-6993.
  • Thom R.M., G.D. Williams, and A.B. Borde. 2004. "Conceptual Models as a Tool for Assessing, Restoring, and Managing Puget Sound Habitats and Resources." In 2003 Georgia Basin/Puget Sound Resarch Conference Proceedings, March 31-April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5814.
  • Williams G.D., R.M. Thom, J.A. Southard, S.L. Sargeant, D.K. Shreffler, and M.T. Stamey. 2004. "Assessing Overwater Structure-Related Predation on Juvenile Salmon: A Field Study and Protocol for Weighing the Evidence." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Mary 31- April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37954.
  • Williams G.D., R.M. Thom, N.R. Evans, A.B. Borde, and P.N. Best. 2004. "Bainbridge Island Nearshore Habitat Characterization and Assessment." In 2003 Georgia Basin/Puget Sound Research Conference, March 31 - April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5819.
  • Williams G.D., W.H. Pearson, N.R. Evans, and M.G. Anderson. 2004. Benson Beach Demonstration Project: Composition and Abundance of Biota at Three Alternative Sump Sites. PNNL-14522. Richland, WA: Pacific Northwest National Laboratory.

2003

  • Allen-Gil S.M., J. Ford, B.K. Lasorsa, M. Monetti, T. Vlasova, and D.H. Landers. 2003. "Heavy Metal Contamination in the Taimyr Peninsula, Siberian Arctic." Science of the Total Environment 301. PNWD-SA-6050.
  • Anderson J.W., J.M. Jones, D.L. McCoy, A. Fujita, T. Yamamoto, and S. Iijima. 2003. "Comparison Between a Rapid Biological Screening Method (EPA 4425) for TCDDs/TCDFs and Chemical Analytical Methods." In Proceedings to Dioxin 2003: The 23rd International Symposium on Halogenated Environmental Organic Pollutants and Persistent Organic Pollutants published in Organohalogen Compounds Vol. 60, 60, 271-274. Bayreuth:Eco Informa Press. PNWD-SA-6073.
  • Borde A.B., R.M. Thom, S. Rumrill, and L.M. Miller. 2003. "Geospatial Habitat Analysis in Pacific Northwest Coastal Estuaries." Estuaries 26, no. 4B:1104-1116. PNWD-SA-5811.
  • Carlson T.J., and J.P. Duncan. 2003. Evolution of the Sensor Fish Device for Measuring Physical Conditions in Severe Hydraulic Environments. PNNL-15708. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., J.P. Duncan, and T.L. Gilbride. 2003. "The Sensor Fish: Measuring Fish Passage in Severe Hydraulic Conditions." Hydro Review 22, no. 3:62-69. PNNL-SA-37530.
  • Crecelius E.A., R.K. Johnston, J. Leather, J. Guerrero, M.C. Miller, and J.M. Brandenberger. 2003. "Contaminant Mass Balance for Sinclair and Dyes Inlets, Puget Sound, WA." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-38523.
  • Diefenderfer H.L., S.L. Sargeant, R.M. Thom, A.B. Borde, P.F. Gayaldo, C.A. Curtis, and B.L. Court, et al. 2003. "Dock Design to Facilitate the Restoration of Eelgrass in Port Townsend Bay, Washington." In Assembling the Pieces - Restoration, Design and Landscape Ecology: Proceedings of the Annual Conference of the Society for Ecological Restoration International, November 19-22, 2003, Austin, Texas. Tucson, Arizona:Society for Ecological Restoration International. PNWD-SA-6035.
  • Faber D.M., M.A. Weiland, T.J. Carlson, K. Cash, and S.A. Zimmerman. 2003. The Feasibility of Using an Ultrasonic Fish Tracking System in the Tailrace of Lower Granite Dam in 2002. PNNL-14340. Richland, WA: Pacific Northwest National Laboratory.
  • Gray J.E., M.E. Hines, H. Biester, and B.K. Lasorsa. 2003. "Mercury Methylation in Mine Wastes Collected from Abandoned Mercury Mines in the USA." Journal de physique IV 107. PNWD-SA-6084.
  • Huesemann M.H. 2003. "Recognizing the Limits of Environmental Science and Technology." Environmental Science & Technology 37, no. 13:259A-261A. PNNL-SA-36441.
  • Huesemann M.H. 2003. "The Limits of Technological Solutions to Sustainable Development." Clean Technologies and Environmental Policy 5. PNNL-SA-33414.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2003. "Assessment of Bioavailability Limitations During Slurry Biodegradation of Petroleum Hydrocarbons in Aged Soils." Environmental Toxicology and Chemistry 22, no. 12:2853-2860. PNNL-SA-40844.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2003. "Biodegradation of Hopane Prevents Use As Conservative Biomarker During Bioremediation of PAHs in Petroleum Contaminated Soils." Bioremediation Journal 7, no. 2:111-117. PNNL-SA-36442.
  • Johnson G.E., R.M. Thom, A.H. Whiting, G.B. Sutherland, T.J. Berquam, B. Ebberts, and N.M. Ricci, et al. 2003. An Ecosystem-Based Restoration Plan with Emphasis on Salmonid Habitats in the Lower Columbia River and Estuary. PNNL-14412. Richland, WA: Pacific Northwest National Laboratory.
  • Moursund R.A., T.J. Carlson, and R.D. Peters. 2003. "A Fisheries Application of a Dual-Frequency Identification Sonar Acoustic Camera." ICES Journal of Marine Science 60, no. 3:678-683. PNWD-SA-5755.
  • Paulay G., R.K. Kropp, P.K. Ng, and L.G. Eldredge. 2003. "The crustaceans and pycnogonids of the Mariana Islands." Micronesica 35-36. PNNL-SA-36621.
  • Pearson W.H., G.D. Williams, and J.R. Skalski. 2003. Estimated Entrainment of Dungeness Crab During Maintenance Dredging of the Mouth of the Columbia River, Summer 2002. PNNL-14190. Richland, WA: Pacific Northwest National Laboratory.
  • Powell D.B., R.C. Palm, A.D. Skillman, and K. Godtfredsen. 2003. "Immunocompetence of Juvenile Chinook Salmon Against Listonella anguillarum Following Dietary Exposure to Aroclor (R) 1254." Environmental Toxicology and Chemistry 22, no. 2:285-295. PNWD-SA-6194.
  • Sargeant S.L., R.M. Thom, H.L. Diefenderfer, A.B. Borde, and J.A. Southard. 2003. "Evaluation of Methods to Increase Light under Large Overwater Structures." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37320.
  • Schultz I.R., A.D. Skillman, J. Nicolas, D.G. Cyr, and J.J. Nagler. 2003. "Short-term exposure to 17alpha-ethynylestradiol decreases the fertility of sexually maturing male rainbow trout (Oncorhynchus mykiss)." Environmental Toxicology and Chemistry 22, no. 6:1272-1280. PNNL-SA-39055.
  • Southard J.A., G.D. Williams, S.L. Sargeant, H.L. Diefenderfer, and M.L. Blanton. 2003. "Using Advanced Scientific Diving Technologies to Assess the Underwater Environment." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37344.
  • Thom R.M., A.B. Borde, S. Rumrill, D.L. Woodruff, G.D. Williams, J.A. Southard, and S.L. Sargeant. 2003. "Factors Influencing Spatial and Annual Variability in Eelgrass (Zostera marina L.) Meadows in Willapa Bay, Washington, and Coos Bay, Oregon, Estuaries." Estuaries 26, no. 4B:1117-1129. PNWD-SA-5838.
  • West J.M., G.D. Williams, S.P. Madon, and J.B. Zedler. 2003. "Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary." Environmental Biology of Fishes 67. PNWD-SA-6314.

2002

  • Blanton S.L., R.M. Thom, A.B. Borde, H.L. Diefenderfer, and J.A. Southard. 2002. Evaluation of Methods to Increase Light Under Ferry Terminals. PNNL-13714. Richland, WA: Pacific Northwest National Laboratory.
  • Gray J.E., J.G. Crock, and B.K. Lasorsa. 2002. "Mercury Methylation at Mercury Mines In The Humboldt River Basin, Nevada, USA." Geochemistry. Exploration, Environment, and Analysis 2, no. 2:143-149. PNWD-SA-5598.
  • Hedgepeth J., G.E. Johnson, J.R. Skalski, and J. Burczynski. 2002. "Active Fish Tracking Sonar (AFTS) for Assessing Fish Behaviour." In European Conference on Underwater Acoustics, published in "Acta Acustica United with Acustica", 88, 739-742. Stuttgart:S. Hirzel Verlag. PNWD-SA-5739.
  • Huesemann M.H. 2002. "The Inherent Biases in Environmental Research and Their Effects on Public Policy." Futures 34, no. 7:621-633. PNNL-SA-33411.
  • Huesemann M.H., A.D. Skillman, and E.A. Crecelius. 2002. "The Inhibition of Marine Nitrification by Ocean Disposal of Carbon Dioxide." Marine Pollution Bulletin 44, no. 2:142-148. PNNL-SA-33944.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2002. "Microbial Factors Rather Than Bioavailability Limit the Rate and Extent of PAH Biodegradation in Aged Crude Oil Contaminated Model Soils." Bioremediation Journal 6, no. 4:321-336. PNNL-SA-34838.
  • Johnson R.L., M. Simmons, C.S. Simmons, and S.L. Blanton. 2002. "A New Multibeam Sonar Technique for Evaluating Fine-Scale Fish Behavior Near Hydroelectric Dam Guidance Structures." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 2001, edited by Coutant, C., 26, 161-170. Bethesda, Maryland:Amer. Fisheries Society. PNNL-SA-34097.
  • Kohn N.P., and N.R. Evans. 2002. Phase I Source Investigation, Heckathorn Superfund Site, Richmond, California. PNNL-14088. Richland, WA: Pacific Northwest National Laboratory.
  • Kohn N.P., and R.K. Kropp. 2002. Year 5 Post-Remediation Biomonitoring of Pesticides and other Contaminants in Marine Waters near the United Heckathorn Superfund Site, Richmond, California. PNNL-13990. Richland, WA: Pacific Northwest National Laboratory.
  • Miller M.C., G.D. Williams, L.K. O'Rourke, J.A. Southard, and S.L. Blanton. 2002. Effects of Shoreline Hardening and Shoreline Protection Features on Fish Utilization and Behavior at Washaway Beach, Washington (Report 2). PNNL-13635-(2). Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., G.D. Williams, and J.R. Skalski. 2002. Estimated Entrainment of Dungeness Crab During Dredging For The Columbia River Channel Improvement Project. PNNL-14129. Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., M.C. Richmond, and J. Schafer. 2002. "Culvert Testing Program for Juvenile Salmonid Passage." In Proceedings of the International Conference on Ecology and Transportation, Keystone, CO, September 24-28, 2001., 92-97. Raleigh, North Carolina:NC State University, Center for Transportation and the Environment. PNNL-SA-37260.
  • Saghir S.A., and I.R. Schultz. 2002. "Low-Dose Pharmacokinetics and Oral Bioavailability of Dichloroacetate in Naive and GST-zeta Depleted Rats." Environmental Health Perspectives 110, no. 8:757-763. PNWD-SA-5424.
  • Schultz I.R., J.L. Merdink, A. Gonzalez-Leon, and R.J. Bull. 2002. "Dichloroacetate toxicokinetics and disruption of tyrosine catabolism in B6C3F1 mice: dose-response relationships and age as a modifying factor." Toxicology. PNWD-SA-5505.
  • Steimle F., K.L. Foster, R.K. Kropp, and B. Conlin. 2002. "Benthic macrofauna productivity enhancement by an artificial reef in Delaware Bay, USA." ICES Journal of Marine Science 59. PNWD-SA-6196.
  • Thom R.M., A.B. Borde, G.D. Williams, J.A. Southard, and S.L. Blanton. 2002. "Adaptive Management to Improve Seagrass Restoration Success." In Watershed 2002: Proceedings of the Water Environment Federation, February 23-27, 2002, Fort Lauderdale, Florida, 362-373. Alexandria, Virginia:Water Environment Federation. PNWD-SA-5520.
  • Thom R.M., R. Zeigler, and A.B. Borde. 2002. "Floristic Development Patterns in a Restored Elk River Estuarine Marsh, Grays Harbor, Washington." Restoration Ecology 10, no. 3:487-496. PNNL-SA-37599.
  • Thom R.M., S.L. Blanton, A.B. Borde, G.D. Williams, D.L. Woodruff, and M.H. Huesemann. 2002. "Investigations into Wetland Carbon Sequestration as Remediation for Global Warming." In International Conference on Wetlands and Remediation; Wetlands and Remediation II, edited by KW Nehring and SE Brauning, 311-320. Columbus, Ohio:Battelle Press. PNNL-SA-35183.

2001

  • Adams N., G.E. Johnson, D.W. Rondorf, S.M. Anglea, and T.O. Wik. 2001. "Biological Evaluation of the Behavioral Guidance Structure at Lower Granite Dam on the Snake River, Washington in 1998." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 26, 145-160. Bethesda, Maryland:American Fisheries Society. PNWD-SA-5614.
  • Carlson T.J., and M.A. Weiland. 2001. Light-Emitting Tag Testing in Conjunction with Testing of the Minimum Gap Runner Turbine Design at Bonneville Dam Powerhouse 1. PNNL-13415. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., G.R. Ploskey, R.L. Johnson, R.P. Mueller, M.A. Weiland, and P.N. Johnson. 2001. Observations of the Behavior and Distribution of Fish in Relation to the Columbia River Navigation Channel and Channel Maintenance Activities. PNNL-13595. Richland, WA: Pacific Northwest National Laboratory.
  • Clements W., S.N. Luoma, J. Gerritsen, A. Hatch, P. Jepson, T. Reynoldson, and R.M. Thom. 2001. "Stressor Interactions in Ecological Systems." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 215-233. Pensacola, Florida:SETAC Press. PNWD-SA-5436.
  • Faber D.M., M.A. Weiland, R. Moursund, T.J. Carlson, N. Adams, and D. Rhondorf. 2001. Evaluation of the Fish Passage Effectiveness of the Bonneville I Prototype Surface Collector using Three-Dimensional Ultrasonic Fish Tracking. PNNL-13526. Richland, WA: Pacific Northwest National Laboratory.
  • Huesemann M.H. 2001. "Can Pollution Problems Be Effectively Solved by Environmental Science and Technology? An Analysis of Critical Limitations." Ecological Economics 37, no. 2:271-287. PNNL-SA-33413.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2001. "Assessment of mass-transfer limitations during slurry bioremediation of PAHs and alkanes in aged soils." In Bioremediation Of Energetics, Phenolics, And Polycyclic Aromatic Hydrocarbons: the Sixth International In Situ and On-Site Bioremediation Symposium, San Diego, California, June 4-7, 2001, 3, 157-163. Columbus, Ohio:Battelle Press. PNNL-SA-31635.
  • Johnson G.E., and T.J. Carlson. 2001. Monitoring and Evaluation of the Prototype Surface Collector at Bonneville First Powerhouse in 2000: Synthesis of Results. PNNL-13516. Richland, WA: Pacific Northwest National Laboratory.
  • Kohn N.P., and R.K. Kropp. 2001. Year 3 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, California. PNNL-13286. Richland, WA: Pacific Northwest National Laboratory.
  • Long W.L., and R.M. Thom. 2001. "Part III. Seagrass Habitat Conservation. Chapter 21. Improving seagrass habitat quality." In Global Seagrass Research Methods. 407-445. Amsterdam:Elsevier. PNWD-SA-5555.
  • Luoma S.N., W. Clements, J. Gerritsen, A. Hatch, P. Jepson, T. Reynoldson, and R.M. Thom. 2001. "Separating stressor influences from environmental variability: eight case studies from aquatic and terrestrial ecosystems." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 179-215. Pensacola, Florida:SETAC Press. PNWD-SA-5435.
  • Luoma S.N., W. Clements, T. Dewitt, J. Gerritsen, A. Hatch, P. Jepson, and T. Reynoldson, et al. 2001. "Role of Environmental Variability in Evaluating Stressor Effects." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 141-179. Pensacola, Florida:SETAC Press. PNWD-SA-5437.
  • Madon S.P., G.D. Williams, J.M. West, and J.B. Zedler. 2001. "The importance of marsh access to growth of the California killifish, Fundulus parvipinnis, evaluated through bioenergetics modeling." Ecological Modelling 136, no. 2-3:149-165. PNWD-SA-5441.
  • Merdink J.L., R.J. Bull, and I.R. Schultz. 2001. "Toxicokinetics of Bromodichloroacetate in B6C3F1 mice." Journal of Applied Toxicology 21, no. 1:53-57. PNWD-SA-5210.
  • Paluszkiewicz T., L.F. Hibler, M.C. Richmond, D.J. Bradley, and S.A. Thomas. 2001. "Modeling the Potential Radionuclide Transport by the Ob and Yenisey Rivers to the Kara Sea." Marine Pollution Bulletin 43, no. 1-6:111-121. PNNL-SA-30639.
  • Riley R.G., C.J. Thompson, M.H. Huesemann, Z. Wang, B.M. Peyton, T.J. Fortman, and M.J. Truex, et al. 2001. "Artificial Aging of Phenanthrene in Porous Silicas Using Supercritical Carbon Dioxide." Environmental Science & Technology 35, no. 18:3707-3712. PNNL-SA-34512.
  • Schultz I.R., and S.R. Sylvester. 2001. "Stereospecific Toxicokinetics of Bromochloro- and chlorofluoroacetate: Effect of GST-zeta Depletion." Toxicology and Applied Pharmacology 175, no. 2:104-113. PNWD-SA-5376.
  • Schultz I.R., G.A. Orner, J.L. Merdink, and A.D. Skillman. 2001. "Dose-response relationships and pharmacokinetics of vitellogenin in rainbow trout after intravascular administration of 17 alpha-ethynylestradiol." Aquatic Toxicology 51, no. 3:305-318. PNWD-SA-5211.
  • Thom R.M., A.B. Borde, G.D. Williams, J.A. Southard, S.L. Blanton, and D.L. Woodruff. 2001. "Effects of Multiple Stressors on Eelgrass Restoration Projects." In Proceedings of Puget Sound Research 2001, the fifth Puget Sound Research Conference, edited by Droscher, Toni, 1. Olympia, Washington:Puget Sound Water Quality Action Team. PNWD-SA-5434.
  • Thom R.M., A.B. Borde, K.O. Richter, and L.F. Hibler. 2001. "Influence of Urbanization on Ecological Processes in Wetlands." In Land Use and Watersheds : Human Influence on Hydrology and Geomorphology in Urban and Forest Areas. Water Science and Application, edited by Mark Wigmosta and Stephen Burges, 2, 5-16. Washington, District Of Columbia:American Geophysical Union. PNWD-SA-5187.
  • Thom R.M., A.B. Borde, S.L. Blanton, D.L. Woodruff, and G.D. Williams. 2001. "The Influence of Climate Variation and Change on Structure and Processes in Nearshore Vegetated Communities of Puget Sound and other Northwest Estuaries." In Proceedings of the 2001 Puget Sound Research Conference. Olympia, Washington:Puget Sound Water Quality Action Team. PNNL-SA-34977.
  • Wang Z., D. Friedrich, M.R. Beversluis, S.L. Hemmer, A.G. Joly, M.H. Huesemann, and M.J. Truex, et al. 2001. "A Fluorescence Spectroscopic Study of Phenanthrene Sorbed on Porous Silica." Environmental Science & Technology 35, no. 13:2710-2716. PNNL-SA-33334.
  • Williams G.D., N.R. Evans, W.H. Pearson, and J.A. Southard. 2001. Assessing Juvenile Salmonid Passage Through Culverts: Field Research in Support of Protocol Development. PNNL-13708. Richland, WA: Pacific Northwest National Laboratory.

2000

  • Barron M.G., I.R. Schultz, and M.E. Newman. 2000. "Pharmacokinetics of Intravascularly Administered (65)Zinc in Channel Catfish (Ictalurus punctatus)." Ecotoxicology and Environmental Safety 45, no. 3:304-309. PNWD-SA-5223.
  • Emmett R., R. Llanso, J. Newton, R.M. Thom, M. Hornberger, C. Morgan, and C. Levings, et al. 2000. "Geographic Signatures of North American West Coast Estuaries." Estuaries 23, no. 6:765-792. PNWD-SA-5430.
  • Geist D.R., C.S. Abernethy, S.L. Blanton, and V.I. Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129, no. 1:126-135. PNNL-SA-27849.
  • Huesemann M.H. 2000. "Why Most Remediation Technologies are Inherently Incapable of Solving Environmental Problems." In Risk, Regulatory, and Monitoring Considerations: Remediation of Chlorinated and Recalcitrant Compounds. International Conference on Remediation of Chlorinated and Recalcitrant Copounds, Monterey, California, May 22-25, 2000, edited by GB Wickramanayake, AR Gavaskar, ME Kelley, KW Nehring, 1, 271-277. Columbus, Ohio:Battelle Press. PNNL-SA-33410.
  • Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2000. "Comparison of PAH Biodegradation and Desorption Kinetics During Bioremediation of Aged Petroleum Hydrocarbon Contaminated Soils." In Case Studies in the remediation of Chlorinated and Recalcitrant Compounds; Second International Conference on Remediation of Chlorinated and Recalcitrant Copounds, Monterey, California, May 22-25, 2000, edited by GB Wickramanayake, AR Gavaskar, JT Gibbs, JL Means, 7, 181-188. Columbia, Ohio:Battelle Press. PNNL-SA-33409.
  • Johnson G.E., N.S. Adams, R.L. Johnson, D.W. Rondorf, D.D. Dauble, and T.Y. Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129, no. 2:381-397. PNWD-SA-5610.
  • Johnson R.L., and G.E. Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, edited by Mufeed Odeh, 57-67. Bethesda, Maryland:American Fisheries Society. PNWD-SA-4665.
  • Merdink J.L., R.J. Bull, and I.R. Schultz. 2000. "Trapping and Identification of the Dichloroacetate Radical from the Reductive Dehalogenation of Trichloroacetate by Mouse and Rat Liver Microsomes." Free Radical Biology & Medicine 29, no. 2:125-130. PNWD-SA-5224.
  • Thom R.M. 2000. "Adaptive management of coastal ecosystem restoration projects." Ecological Engineering 15, no. 3-4:365-372. PNWD-SA-5738.
  • Woodruff D.L., P.J. Farley, A.B. Borde, J.A. Southard, and R.M. Thom. 2000. King County Nearshore Habitat Mapping Data Report: Picnic Point to Shilshole Bay Marina. PNNL-13396. Richland, WA: Pacific Northwest National Laboratory.

1999

  • Bloom N.S., and B.K. Lasorsa. 1999. "Changes in mercury speciation and the release of methyl mercury as a result of marine sediment dredging activities." Science of the Total Environment 238, no. special issue:379-385. PNNL-SA-31275.
  • Gonzalez-Leon A., J.L. Merdink, R.J. Bull, and I.R. Schultz. 1999. "Effect of Pretreatment with Dichloroacetic or Trichloroacetic Acid in Drinking water on the Pharmacokinetics of a Subsequent Challenge Dose in B6C3F1 Mice." Chemico-Biological Interactions 123, no. 3:239-53. PNWD-SA-5011.
  • Nassar A.F., A.F. Nassar, S.V. Lucas, S.V. Lucas, and S.A. Thomas. 1999. "Determination of O-isopropyl methylphosphonic acid in living microorganism-agar matrixes using ion chromatography conductivity detection." Analytical Letters 32, no. 5:1023-1035. PNNL-SA-31695.
  • Pearson W.H., R.A. Elston, R.W. Bienert, A.S. Drum, and L.D. Antrim. 1999. "Why did the Prince William Sound, Alaska, Pacific herring (Clupea pallasi) fisheries collapse in 1993 and 1994? Review of hypotheses." Canadian Journal of Fisheries and Aquatic Sciences 56, no. 4:711-737. PNWD-SA-4387.
  • Peters E.L., I.R. Schultz, and M.C. Newman. 1999. "Rubidium and Cesium Kinetics and Tissue Distributions in Channel Catfish (Ictalurus punctatus)." Ecotoxicology 8, no. 4:287-300. PNWD-SA-5230.
  • Schultz I.R., and W.L. Hayton. 1999. "Interspecies Scaling of the Bioaccumulation of Lipophilic Xenobiotics in Fish: An Example Using Trifluralin." Environmental Toxicology and Chemistry 18, no. 7:1440-1449. PNWD-SA-5227.
  • Schultz I.R., and W.L. Hayton. 1999. "Predicting the Toxicokinetics of Trifluralin in Rainbow Trout Using Clearance-Volume Pharmacokinetic Models." In Xenobiotics in Fish, edited by David J.Smith, William H.Gingerich, Maria G.Barker, VIII, 133-148. New York, New York:Kluwer Academic/Plenum Publishers. PNWD-SA-5233.

1998

  • Johnson R.L., D.S. Daly, and G.E. Johnson. 1998. "Combining Hydroacoustics, Flow Models to Study Fish Behavior." Hydro Review XVII, no. 7:40-56. PNWD-SA-4485.
  • Pearson W.H., S.M. Al-Ghais, J.M. Neff, C.J. Brandt, K.F. Wellman, and T. Green. 1998. "Assessment of Damages to Commercial Fisheries and Marine Environment of Fujairah, United Arab Emirates, Resulting from the Seki Oil Spill of March 1994: A Case Study." In Transformations of Middle Eastern Natural Environments: Legacies and Lessons, Bulletin series. 407-428. New Haven, Connecticut:Yale School of Forestry & Environmental Studies. PNWD-SA-4668.
  • Randolph R.C., J.T. Hardy, S.W. Fowler, A.G. Price, and W.H. Pearson. 1998. "Toxicity and Persistence of Nearshore Sediment Contamination Following the 1991 Gulf War." Environment International 24. PNNL-SA-31727.

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