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Marine Sciences Division

Publications

Find publications on renewable marine energy, environment, and national security

Search for reports and papers by Marine Science research scientists. Full documents are available for some reports.


Recent Publications

(649 publications to date)

2017

  • Breithaupt SA, AE Copping, J Tagestad, and JM Whiting. 2017. "Maritime Route Delineation using AIS Data from the Atlantic Coast of the US." The Journal of Navigation 70(2):379-394.  doi:10.1017/S0373463316000606
  • Ward ND, TS Bianchi, PM Medeiros, M Seidel, JE Richey, RG Keil, and HO Sawakuchi. 2017. "Where carbon goes when water flows: Carbon cycling across the aquatic continuum." Frontiers in Marine Science 4:Article No. 7. 
  • Coles GA, AC Dalton, KM Branch, R Prasad, NP Kohn, and AC Bittner. 2017. "Framework for Evaluating the Impact of Environmental Conditions on Manual Actions." In Advances in Human Factors in Energy: Oil, Gas, Nuclear and Electric Power Industries: Proceedings of the AHFE 2016 International Conference on Human Factors in Energy: Oil, Gas, Nuclear and Electric Power Industries, July 27-31, 2016, Orlando, Florida, vol. 495, ed. SM Cetiner, P Fechtelkotter and M Legatt, pp. 157-169.  Springer International Publishing, Cham, Switzerland.  doi:10.1007/978-3-319-41950-3_14
  • Gagne-Maynard W, ND Ward, RG Keil, HO Sawakuchi, A Cunha, V Neu, D Brito, D Less, J Diniz, A Valerio, M Kampel, A Krusche, and JE Richey. 2017. "Evaluation of primary production in the lower Amazon River based on a dissolved oxygen stable isotopic mass balance." Frontiers in Marine Science 4:Article No. 26. 
  • Khangaonkar TP, W Long, and W Xu. 2017. "Assessment of Circulation and Inter-Basin Transport in the Salish Sea including Johnstone Strait and Discovery Islands Pathways." Ocean Modelling 109:11-32.  doi:10.1016/j.ocemod.2016.11.004

2016

  • Balaguru K, GR Foltz, RL Leung, and K Emanuel. 2016. "Global warming-induced upper-ocean freshening and the intensification of super typhoons." Nature Communications 7:13670.  doi:10.1038/ncomms13670
  • Balaguru K, RL Leung, J Lu, and GR Foltz. 2016. "A meridional dipole in pre-monsoon Bay of Bengal tropical cyclone activity induced by ENSO." Journal of Geophysical Research. D. (Atmospheres) 121(12):6954-6968.  doi:10.1002/2016JD024936
  • Diefenderfer HL, AB Borde, IA Sinks, VI Cullinan, and SA Zimmerman. 2016. Columbia Estuary Ecosystem Restoration Program: Restoration Design Challenges for Topographic Mounds, Channel Outlets, and Reed CanarygrassPNNL-24676, Pacific Northwest National Laboratory, Richland, WA. 
  • Diefenderfer HL, GE Johnson, RM Thom, KE Buenau, LA Weitkamp, CM Woodley, AB Borde, and RK Kropp. 2016. "Evidence-based Evaluation of the Cumulative Effects of Ecosystem Restoration." Ecosphere 7(3):e01242.  doi:10.1002/ecs2.1242
  • Fu T, Z Deng, JP Duncan, D Zhou, TJ Carlson, GE Johnson, and H Hou. 2016. "Assessing Hydraulic Conditions through Francis turbines using an autonomous sensor device." Renewable Energy 99:1244-1252.  doi:10.1016/j.renene.2016.08.029
  • Gillies KA, SM Krone, JJ Nagler, and IR Schultz. 2016. "A Computational Model of the Rainbow Trout Hypothalamus-Pituitary-Ovarian-Liver Axis." PLoS Computational Biology 12(4):Article No. e1004874.  doi:10.1371/journal.pcbi.1004874
  • Tagestad JD, ML Brooks, VI Cullinan, JL Downs, and R McKinley. 2016. "Precipitation regime classification for the Mojave Desert: Implications for Fire Occurrence." Journal of Arid Environments 124:388-397 .  doi:10.1016/j.jaridenv.2015.09.002
  • Wood JR, GA Gill, LJ Kuo, JE Strivens, and KY Choe. 2016. "Comparison of Analytical Methods for the Determination of Uranium in Seawater Using Inductively Coupled Plasma Mass Spectrometry." Industrial and Engineering Chemistry Research 55(15):4344-4350.  doi:10.1021/acs.iecr.5b03680
  • Abney CW, S Das, RT Mayes, LJ Kuo, JR Wood, GA Gill, M Piechowicz, Z Lin, W Lin, and S Dai. 2016. "A report on emergent uranyl binding phenomena by an amidoxime phosphonic acid co-polymer." Physical Chemistry Chemical Physics. PCCP 18(34):23462-23468.  doi:10.1039/c6cp04772f
  • Balaguru K, DR Judi, and RL Leung. 2016. "Future hurricane storm surge risk for the U.S. gulf and Florida coasts based on projections of thermodynamic potential intensity." Climatic Change 138(1):99–110.  doi:10.1007/s10584-016-1728-8
  • Brown S, Y Yue, LJ Kuo, N Mehio, M Li, GA Gill, C Tsouris, RT Mayes, T Saito, and S Dai. 2016. "Uranium Adsorbent Fibers Prepared by Atom-Transfer Radical Polymerization (ATRP) from Poly(vinyl chloride)-co-chlorinated Poly(vinyl chloride) (PVC-co-CPVC) Fiber." Industrial and Engineering Chemistry Research 55(15):4139-4148.  doi:10.1021/acs.iecr.5b03355
  • Chouyyok W, CL Warner, KE Mackie, MG Warner, GA Gill, and RS Addleman. 2016. "Nanostructured Metal Oxide Sorbents for the Collection and Recovery of Uranium from Seawater." Industrial and Engineering Chemistry Research 55(15):4195-4207.  doi:10.1021/acs.iecr.5b03650
  • Chouyyok W, JW Pittman, MG Warner, KM Nell, DC Clubb, GA Gill, and RS Addleman. 2016. "Surface Functionalized Nanostructured Ceramic Sorbents for the Effective Collection and Recovery of Uranium from Seawater." Dalton Transactions 45(28):11312-11325.  doi:10.1039/c6dt01318j
  • Copping AE, SA Breithaupt, JM Whiting, ME Grear, JD Tagestad, and GA Shelton. 2016. "Likelihood of a Marine Vessel Accident from Wind Energy Development in the Atlantic." Wind Energy 19(9):1557-1566.  doi:10.1002/we.1935
  • Das S, C Tsouris, C Zhang, J Kim, S Brown, Y Oyola, C Janke, RT Mayes, LJ Kuo, JR Wood, GA Gill, and S Dai. 2016. "Enhancing Uranium Uptake by Amidoxime Adsorbent in Seawater: An investigation for optimum alkaline conditioning parameters." Industrial and Engineering Chemistry Research 55(15):4294-4302.  doi:10.1021/acs.iecr.5b02735
  • Das S, SS Brown, RT Mayes, CJ Janke, C Tsouris, LJ Kuo, GA Gill, and S Dai. 2016. "Novel Poly(imide dioxime) Sorbents: Development and testing for enhanced extraction of uranium from natural seawater." Chemical Engineering Journal 298:125-135.  doi:10.1016/j.cej.2016.04.013
  • Das S, WP Liao, M Flicker Byers, C Tsouris, CJ Janke, RT Mayes, E Schneider, LJ Kuo, JR Wood, GA Gill, and S Dai. 2016. "Alternative Alkaline Conditioning of Amidoxime Based Adsorbent for Uranium Extraction from Seawater." Industrial and Engineering Chemistry Research 55(15):4303-4312.  doi:10.1021/acs.iecr.5b03210
  • Das S, Y Oyola, RT Mayes, CJ Janke, LJ Kuo, GA Gill, JR Wood, and S Dai. 2016. "Extracting Uranium from Seawater: Promising AF Series Adsorbents." Industrial and Engineering Chemistry Research 55(15):4110-4117.  doi:10.1021/acs.iecr.5b03136
  • Das S, Y Oyola, RT Mayes, CJ Janke, LJ Kuo, GA Gill, JR Wood, and S Dai. 2016. "Extracting Uranium from Seawater: Promising AI Series Adsorbents." Industrial and Engineering Chemistry Research 55(15):4103-4109.  doi:10.1021/acs.iecr.5b03135
  • Deng Z, AHA Colotelo, RS Brown, and TJ Carlson. 2016. "Environmental Issues Related to Conventional Hydropower." Chapter 38 in Alternative Energy and Shale Gas Encyclopedia, ed. JH Lehr, J Keeley and TB Kingery, pp. 404-409.  John Wiley & Sons, Inc., Hoboken, NJ.  doi:10.1002/9781119066354.ch38
  • Deng Z, TJ Carlson, GR Ploskey, RS Brown, GE Johnson, and AHA Colotelo. 2016. "Experimental and numerical modeling tools for conventional hydropower systems." Chapter 44 in Alternative Energy and Shale Gas Encyclopedia, ed. JH Lehr, J Keeley and TB Kingery, pp. 448-464.  John Wiley & Sons, Inc., Hoboken, NJ.  doi:10.1002/9781119066354.ch44
  • Feng Z, LY Leung, SM Hagos, RA Houze, CD Burleyson, and K Balaguru. 2016. "More frequent intense and long-lived storms dominate the springtime trend in central U.S. rainfall." Nature Communications 7:13429.  doi:10.1038/ncomms13429
  • Foltz GR, and K Balaguru. 2016. "Prolonged El Niño conditions in 2014–15 and the rapid intensification of Hurricane Patricia in the eastern Pacific." Geophysical Research Letters 43(19):10,347-10,355.  doi:10.1002/2016GL070274
  • Ford NR, KA Hecht, D Hu, G Orr, Y Xiong, T Squier, GL Rorrer, and G Roesijadi. 2016. "Antigen Binding and Site-Directed Labeling of Biosilica-Immobilized Fusion Proteins Expressed in Diatoms." ACS Synthetic Biology 5(3):193-199.  doi:10.1021/acssynbio.5b00191
  • Gill GA, LJ Kuo, CJ Janke, J Park, RT Jeters, GT Bonheyo, HB Pan, C Wai, T Khangaonkar, L Bianucci, JR Wood, MG Warner, SM Peterson, DG Abrecht, R Mayes, C Tsouris, Y Oyola, JE Strivens, NJ Schlafer, RS Addleman, W Chouyyok, S Das, J Kim, KO Buesseler, C Breier, and E D'Alessandro. 2016. "The Uranium from Seawater Program at the Pacific Northwest National Laboratory: Overview of Marine Testing, Adsorbent Characterization, Adsorbent Durability, Adsorbent Toxicity, and Deployment Studies." Industrial and Engineering Chemistry Research 55(15):4264-4277.  doi:10.1021/acs.iecr.5b03649
  • Gill GA, LJ Kuo, JE Strivens, JR Wood, NJ Schlafer, and E D'Alessandro. 2016. Uranium from Seawater Marine Testing Program at the University of Miami’s Broad Key Island Research StationPNNL-25734, Pacific Northwest National Laboratory, Richland, WA. 
  • Gill GA, LJ Kuo, JE Strivens, JR Wood, NJ Schlafer, C Tsouris, CJ Janke, S Das, R Mayes, T Saito, SS Brown, C Tsouris, CM Wai, and HB Pan. 2016. Summary of Adsorption Capacity and Adsorption Kinetics of Uranium and Other Elements on Amidoxime-based Adsorbents from Time Series Marine Testing at the Pacific Northwest National LaboratoryPNNL-25899, Pacific Northwest National Laboratory, Richland, WA. 
  • Harding LB, IR Schultz, DAM Da Silva, GM Ylitalo, D Ragsdale, SI Harris, S Bailey, BV Pepich, and P Swanson. 2016. "Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch)." Aquatic Toxicology 178:118-131.  doi:10.1016/j.aquatox.2016.07.013
  • Harvey OR, AN Myers-Pigg, LJ Kuo, B Singh, KA Kuehn, and P Louchouarn. 2016. "Discrimination in degradability of Soil Pyrogenic Organic Matter follows a Return-On-Energy-Investment Principle." Environmental Science & Technology 50(16):8578-8585.  doi:10.1021/acs.est.6b01010
  • Huesemann MH, BJ Crowe, P Waller, AR Chavis, SJ Hobbs, SJ Edmundson, and MS Wigmosta. 2016. "A Validated Model to Predict Microalgae Growth in Outdoor Pond Cultures Subjected to Fluctuating Light Intensities and Water Temperatures." Algal Research 13:195-206.  doi:10.1016/j.algal.2015.11.008
  • Khangaonkar T, W Long, B Sackman, T Mohamedali, and AF Hamlet. 2016. "Sensitivity of Circulation in the Skagit River Estuary to Sea Level Rise and Future Flows." Northwest Science 90(1):94-118.  doi:10.3955/046.090.0108
  • Kuo LJ, CJ Janke, JR Wood, JE Strivens, S Das, Y Oyola, RT Mayes, and GA Gill. 2016. "Characterization and Testing of Amidoxime-Based Adsorbent Materials to Extract Uranium from Natural Seawater." Industrial and Engineering Chemistry Research 55(15):4285-4293.  doi:10.1021/acs.iecr.5b03267
  • Kuo LJ, GA Gill, JE Strivens, JR Wood, NJ Schlafer, CM Wai, and HB Pan. 2016. Investigations Into the Reusability of Amidoxime-Based Polymeric Uranium AdsorbentsPNNL-25874, Pacific Northwest National Laboratory, Richland, WA. 
  • Larimer CJ, EM Winder, RT Jeters, MS Prowant, I Nettleship, RS Addleman, and GT Bonheyo. 2016. "A Method for Rapid Quantitative Assessment of Biofilms with Biomolecular Staining and Image Analysis." Analytical and Bioanalytical Chemistry 408(3):999-1008.  doi:10.1007/s00216-015-9195-z
  • Li X, Z Deng, LT Rauchenstein, and TJ Carlson. 2016. "Contributed Review: Source-Localization Algorithms and Applications Using Time of Arrival and Time Difference of Arrival Measurements." Review of Scientific Instruments 87(4):Article No. 041502.  doi:10.1063/1.4947001
  • Linley TJ, EJ Krogstad, RP Mueller, GA Gill, and BK Lasorsa. 2016. "Mercury concentrations in Pacific lamprey (Entosphenus tridentatus) and sediments in the Columbia River Basin." Environmental Toxicology and Chemistry 35(10):2571-2576.  doi:10.1002/etc.3423
  • Long W, KW Jung, Z Yang, AE Copping, and Z Deng. 2016. "Coupled Modeling of Hydrodynamics and Sound in Coastal Ocean for Renewable Ocean Energy Development." Marine Technology Society Journal 50(2):27-36.  doi:10.4031/MTSJ.50.2.6
  • Pan HB, LJ Kuo, CM Wai, N Miyamoto, R Joshi, JR Wood, JE Strivens, CJ Janke, Y Oyola, S Das, R Mayes, and GA Gill. 2016. "Elution of Uranium and Transition Metals from Amidoxime- Based Polymer Adsorbents for Sequestering Uranium from Seawater." Industrial and Engineering Chemistry Research 55(15):4313-4320.  doi:10.1021/acs.iecr.5b03307
  • Park J, RT Jeters, LJ Kuo, JE Strivens, GA Gill, NJ Schlafer, and GT Bonheyo. 2016. "Potential impact of seawater uranium extraction on marine life." Industrial and Engineering Chemistry Research 55(15):4278-4284.  doi:10.1021/acs.iecr.5b03430
  • Park J, GA Gill, JE Strivens, LJ Kuo, RT Jeters, A Avila, JR Wood, NJ Schlafer, CJ Janke, EA Miller, M Thomas, RS Addleman, and GT Bonheyo. 2016. "Effect of biofouling on the performance of amidoxime-based polymeric uranium adsorbents." Industrial and Engineering Chemistry Research 55(15):4328-4338.  doi:10.1021/acs.iecr.5b03457
  • Skalski JR, MA Weiland, KD Ham, GR Ploskey, GA Mcmichael, AHA Colotelo, TJ Carlson, CM Woodley, MB Eppard, and EE Hockersmith. 2016. "Status After 5 Years of Survival Compliance Testing in the Federal Columbia River Power System (FCRPS)." North American Journal of Fisheries Management 36(4):720-730.  doi:10.1080/02755947.2016.1165775
  • Tian B, W Wu, Z Yang, and Y Zhou. 2016. "Drivers, Trends, and Potential Impacts of Long-Term Coastal Reclamation in China from 1985 to 2010." Estuarine, Coastal and Shelf Science 170:83-90.  doi:10.1016/j.ecss.2016.01.006
  • Xuan J, Z Yang, D Huang, T Wang, and F Zhou. 2016. "Tidal residual current and its role in the mean flow on the Changjiang Bank." Journal of Marine Systems 154(Part A):66-81.  doi:10.1016/j.jmarsys.2015.04.005
  • Yang Z, and T Wang. 2016. "NUMERICAL MODELS AS ENABLING TOOLS FOR TIDAL-STREAM ENERGY EXTRACTION AND ENVIRONMENTAL IMPACT ASSESSMENT." In Proceedings of the 35th International Conference on Ocean, Offshore and Arctic Engineering, June 18-24, 2016, Busan, South Korea, vol. 6, pp. V006T05A006, OMAE2016-54223.  American Society of Mechanical Engineers, NEW YORK, NY.  doi:10.1115/OMAE2016-54223
  • Yang Z, S Taraphdar, T Wang, LY Leung, and ME Grear. 2016. "Uncertainty and feasibility of dynamical downscaling for modeling tropical cyclones for storm surge simulation." Natural Hazards 84(2):1161-1184.  doi:10.1007/s11069-016-2482-y

2015

  • Aston LM, and AM Gorton. 2015. Scale-up Trials Using Weed Suppressive Soil Bacteria in Rangeland Restoration – Design, Methods, and Implementation: An Experts’ WorkshopPNNL-24833, Pacific Northwest National Laboratory, Richland, WA. 
  • Balaguru K, GR Foltz, RL Leung, E D'Asaro, KA Emanuel, H Liu, and SE Zedler. 2015. "Dynamic Potential Intensity: An improved representation of the ocean’s impact on tropical cyclones." Geophysical Research Letters 42(16):6739-6746.  doi:10.1002/2015GL064822
  • Buenau KE. 2015. Modeling to Support the Development of Habitat Targets for Piping Plovers on the Missouri RiverPNNL-24287, Pacific Northwest National Laboratory, Richland, WA. 
  • Copping AE, G Zydlewski, and AM Redden. 2015. "Special Issue: Renewable Ocean Energy Development and the Environment." Estuaries and Coasts 38(1):S156-S158.  doi:10.1007/s12237-014-9922-2
  • Cullinan VI, S Matzner, and CA Duberstein. 2015. "Classification of Birds and Bats Using Flight Tracks." Journal of Field Ornithology 27:55-63.  doi:10.1016/j.ecoinf.2015.03.004
  • Diefenderfer HL. 2015. "Coastal Conservation." Marine Biology Research 11(4):446-448.  doi:10.1080/17451000.2014.999095
  • Edmundson SJ, and MH Huesemann. 2015. "The Dark Side of Algae Cultivation: characterizing night biomass loss in three photosynthetic algae, Chlorella sorokiniana, Nannochloropsis salina and Picochlorum sp." Algal Research 12:470-476.  doi:10.1016/j.algal.2015.10.012
  • Johnson GE. 2015. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Annual Report for 2015PNNL-24623, Pacific Northwest National Laboratory, Richland, WA. 
  • Wang T, and Z Yang. 2015. "Understanding the Flushing Capability of Bellingham Bay and Its Implication on Bottom Water Hypoxia." Estuarine, Coastal and Shelf Science 165:279-290.  doi:10.1016/j.ecss.2015.04.010
  • Wang T, Z Yang, and AE Copping. 2015. "A Modeling Study of the Potential Water Quality Impacts from In-Stream Tidal Energy Extraction." Estuaries and Coasts 38(1 (Supplement)):173-186.  doi:10.1007/s12237-013-9718-9
  • Whiting JM, and T Khangaonkar. 2015. Hydrodynamic Modeling Analysis for Leque Island and zis a ba Restoration Feasibility StudyPNNL-24023, Pacific Northwest National Laboratory, Richland, WA. 
  • Winder EM, and GT Bonheyo. 2015. "DNA Persistence in Sink Drain Environment." PLoS One 10(7):Article No. e0134798.  doi:10.1371/journal.pone.0134798
  • Attalah S, P Waller, G Khawam, R Ryan, and MH Huesemann. 2015. "ENERGY PRODUCTIVITY OF THE HIGH VELOCITY ALGAE RACEWAY INTEGRATED DESIGN (ARID-HV)." Applied Engineering in Agriculture 31(3):365-375.  doi:10.13031/aea.31.10209
  • Buck C, C Hammerschmidt, K Bowman, GA Gill, and W Landing. 2015. "Flux of Total Mercury and Methylmercury to the Northern Gulf of Mexico from U.S. Estuaries." Environmental Science & Technology 49(24):13992-13999.  doi:10.1021/acs.est.5b03538
  • Coleman AM, HL Diefenderfer, DL Ward, and AB Borde. 2015. "A Spatially Based Area–Time Inundation Index Model Developed to Assess Habitat Opportunity in Tidal–Fluvial Wetlands and Restoration Sites." Ecological Engineering 82:624-642.  doi:10.1016/j.ecoleng.2015.05.006
  • Copping AE, LA Hanna, FB Van Cleve, KM Blake, and RM Anderson. 2015. "Environmental Risk Evaluation System – An Approach to Ranking Risk of Ocean Energy Development on Coastal and Estuarine Environments." Estuaries and Coasts 38(1):S287-S302.  doi:10.1007/s12237-014-9816-3
  • Deng Z, TJ Carlson, H Li, J Xiao, MJ Myjak, J Lu, JJ Martinez, CM Woodley, MA Weiland, and MB Eppard. 2015. "An injectable acoustic transmitter for juvenile salmon." Scientific Reports 5:8111.  doi:10.1038/srep08111
  • Estes MG, M Al-Hamdan, J Ellis, CR Judd, DL Woodruff, RM Thom, D Quattrochi, B Watson, H Rodriguez, H Johnson, and T Herder. 2015. "A Modeling System to Assess Land Cover Land Use Change Effects on SAV habitat in the Mobile Bay Estuary." Journal of the American Water Resources Association 51(2):513-536.  doi:10.1111/jawr.12263
  • Foltz GR, K Balaguru, and LYR Leung. 2015. "A Reassessment of the Integrated Impact of Tropical Cyclones on Surface Chlorophyll in the Western Subtropical North Atlantic." Geophysical Research Letters 42(4):1158-1164.  doi:10.1002/2015GL063222
  • Gill GA, LJ Kuo, JE Strivens, JR Wood, C Wai, and HB Pan. 2015. Investigations into Alternative Desorption Agents for Amidoxime-Based Polymeric Uranium AdsorbentsPNNL-24378, Pacific Northwest National Laboratory, Richland, WA. 
  • Gill GA, LJ Kuo, JE Strivens, JR Wood, NJ Schlafer, C Tsouris, A Ladshaw, and S Yiacoumi. 2015. Investigations into the Effect of Current Velocity on Amidoxime-Based Polymeric Uranium Adsorbent PerformancePNNL-24996, Pacific Northwest National Laboratory, Richland, WA. 
  • Gill GA, LJ Kuo, JE Strivens, J Park, GT Bonheyo, RT Jeters, NJ Schlafer, and JR Wood. 2015. Determination of Adsorption Capacity and Kinetics of Amidoxime-Based Uranium Adsorbent Braided Material in Unfiltered Seawater Using a Flume Exposure SystemPNNL-24543, Pacific Northwest National Laboratory, Richland, WA. 
  • Jay DA, K Leffler, HL Diefenderfer, and AB Borde. 2015. "Tidal-Fluvial and Estuarine Processes in the Lower Columbia River: I. Along-channel Water Level Variations, Pacific Ocean to Bonneville Dam." Estuaries and Coasts 38(2):415-433.  doi:10.1007/s12237-014-9819-0
  • Johnson GE, GR Ploskey, NK Sather, and DJ Teel. 2015. "Residence Times of Juvenile Salmon and Steelhead in Off-Channel Tidal Freshwater Habitats, Columbia River, USA." Canadian Journal of Fisheries and Aquatic Sciences 72(5):684-696.  doi:10.1139/cjfas-2014-0085
  • Larson KB, JD Tagestad, CJ Perkins, MR Oster, WM Warwick, and SH Geerlofs. 2015. A Technical and Economic Optimization Approach to Exploring Offshore Renewable Energy Development in HawaiiPNNL-24639, Pacific Northwest National Laboratory, Richland, WA. 
  • Matzner S, VI Cullinan, and CA Duberstein. 2015. "Two-dimensional thermal video analysis of offshore bird and bat flight." Ecological Informatics 30:20-28.  doi:10.1016/j.ecoinf.2015.09.001
  • Morrison RJ, PJ Peshut, RJ West , and BK Lasorsa. 2015. "Mercury (Hg) speciation in coral reef systems of remote Oceania: Implications for the artisanal fisheries of Tutuila, Samoa Islands." Marine Pollution Bulletin 96(1-2):41-56.  doi:10.1016/j.marpolbul.2015.05.049
  • Pan HB, LJ Kuo, JR Wood, JE Strivens, GA Gill, C Janke, and CM Wai. 2015. "Towards Understanding KOH Conditioning of Amidoxime-based Polymer Adsorbents for Sequestering Uranium from Seawater." RSC Advances 5(122):100715–100721.  doi:10.1039/c5ra14095a
  • Park J, RT Jeters, GA Gill, LJ Kuo, and GT Bonheyo. 2015. Toxicity of Uranium Adsorbent Materials using the Microtox Toxicity TestPNNL-23832, Pacific Northwest National Laboratory, Richland, WA. 
  • Thom RM, and AB Borde. 2015. "ESTUARINE HABITAT RESTORATION." In Encyclopedia of Estuaries, ed. MJ Kennish, pp. 273-285.  Springer, Amsterdam, Netherlands.  doi:10.1007/978-94-017-8801-4_78
  • Tian B, Y Zhou, RM Thom, HL Diefenderfer, and Q Yuan. 2015. "Detecting wetland changes in Shanghai, China using FORMOSAT and Landsat TM imagery." Journal of Hydrology 529(Part 1):1-10.  doi:10.1016/j.jhydrol.2015.07.007
  • Xu B, P Li, P Waller, and MH Huesemann. 2015. "Evaluation of flow mixing in an ARID-HV algal raceway using statistics of temporal and spatial distribution of fluid particles." Algal Research 9:27-39.  doi:10.1016/j.algal.2015.02.027
  • Xu W, and T Khangaonkar. 2015. Temperature Model of the Pelton Round Butte Hydroelectric Project Reservoirs. PNNL-25094, Pacific Northwest National Laboratory, Richland, WA. 
  • Yang Z, T Wang, N Voisin, and AE Copping. 2015. "Estuarine Response to River Flow and Sea-Level Rise under Future Climate Change and Human Development." Estuarine, Coastal and Shelf Science 156:19-30.  doi:10.1016/j.ecss.2014.08.015
  • Yang Z, and T Wang. 2015. "Modeling the Effects of Tidal Energy Extraction on Estuarine Hydrodynamics in a Stratified Estuary ." Estuaries and Coasts 38(1 Supplement):187-202.  doi:10.1007/s12237-013-9684-2
  • Yang Z, and T Wang. 2015. "Responses of Estuarine Circulation and Salinity to the Loss of Intertidal Flats – A Modeling Study." Continental Shelf Research 111(Part B):159-173.  doi:10.1016/j.csr.2015.08.011
  • Yue Y, R Mayes, GA Gill, LJ Kuo, JR Wood, A Binder, S Brown, and S Dai. 2015. "Macroporous Monoliths for Trace Metal Extraction from Seawater." RSC Advances 5(62):50005-50010.  doi:10.1039/c5ra02131f
  • Zimmer MM, BE Naes, DG Willingham, and JM Cloutier. 2015. FY15 Progress Report for PL14-Lg Radius SIMS-PD1Ea: Large Radius SIMS Support / Large Radius SIMS for Nuclear Materials Analysis and CharacterizationPNNL-24781, Pacific Northwest National Laboratory, Richland, WA. 

2014

  • Balaguru K, S Taraphdar, LYR Leung, and GR Foltz. 2014. "Increase in the Intensity of Postmonsoon Bay of Bengal Tropical Cyclones." Geophysical Research Letters 41(10):3594–3601.  doi:10.1002/2014GL060197
  • Balaguru K, S Taraphdar, LYR Leung, GR Foltz, and JA Knaff. 2014. "Cyclone-cyclone Interactions through the Ocean Pathway." Geophysical Research Letters 41(19):6855–6862.  doi:10.1002/2014GL061489
  • Buenau KE, TL Hiller, and AJ Tyre. 2014. "Modeling the effects of river flow on population dynamics of piping plovers (Charadrius melodus) and least terns (Sternula antillarum) nesting on the Missouri River." River Research and Applications 30(8):964-975.  doi:10.1002/rra.2694
  • Copping AE, and B Polagye. 2014. Instrumentation for Monitoring around Marine Renewable Energy Converters: Workshop Final ReportPNNL-23100, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE. 2014. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Fiscal Year 2014 Annual ReportPNNL-23603, Pacific Northwest National Laboratory, Richland, WA. 
  • Kuo LJ, CL Lee, P Louchouarn, CA Huh, JT Liu, JC Chen, and KJ Lee. 2014. "A centennial record of anthropogenic impacts and extreme weather events in southwestern Taiwan: Evidence from sedimentary molecular markers in coastal margin." Marine Pollution Bulletin 86(1-2):244-253.  doi:10.1016/j.marpolbul.2014.07.010
  • Wang T, T Khangaonkar, W Long, and GA Gill. 2014. "Development of a Kelp-type Structure Module in a Coastal Ocean Model to Assess the Hydrodynamic Impact of Seawater Uranium Extraction Technology." Journal of Marine Science and Engineering 2(1):81-92.  doi:10.3390/jmse2010081
  • Bellgraph BJ, KM Carter, MA Chamness, TK Abel, TJ Linley, and VI Cullinan. 2014. "Predation Susceptibility of Juvenile Fall Chinook Salmon Exposed to Sudden Temperature Changes and Slightly Supersaturated Dissolved Gas." In Snake River Fall Chinook Salmon Life History Investigations, 1/1/2012 - 12/31/2012 Annual Report, vol. 2002-032-00, ed. KF Tiffan, et al, pp. 61-90.  Bonneville Power Administration , Pasco, WA. 
  • Chen H, SS Cartmell, Q Wang, TJ Lozano, Z Deng, H Li, X Chen, Y Yuan, ME Gross, TJ Carlson, and J Xiao. 2014. "Micro-battery Development for Juvenile Salmon Acoustic Telemetry System Applications." Scientific Reports 4:Article Number 3790.  doi:10.1038/srep03790
  • Copping AE, SH Geerlofs, and LA Hanna. 2014. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Wave Energy Devices PNNL-23412, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, B Southall, TJ Carlson, J Xu, JJ Martinez, MA Weiland, and JM Ingraham. 2014. "200 kHz Commercial Sonar Systems Generate Lower Frequency Side Lobes Audible to Some Marine Mammals." PLoS One 9(4):e95315.  doi:10.1371/journal.pone.0095315
  • Deng Z, J Lu, MJ Myjak, JJ Martinez, C Tian, SJ Morris, TJ Carlson, D Zhou, and H Hou. 2014. "Design and Implementation of a new Autonomous Sensor Fish to Support Advanced Hydropower Development." Review of Scientific Instruments 85(11):115001.  doi:10.1063/1.4900543
  • Elliott DC, TR Hart, GG Neuenschwander, LJ Rotness, Jr, G Roesijadi, AH Zacher, and JK Magnuson. 2014. "Hydrothermal Processing of Macroalgal Feedstocks in Continuous-Flow Reactors ." ACS Sustainable Chemistry & Engineering 2(2):207-215.  doi:10.1021/sc400251p
  • Fleck J, GA Gill, BA Bergamaschi, TE Kraus, BD Downing, and CN Alpers. 2014. "Concurrent photolytic degradation of aqueous methylmercury and dissolved organic matter." Science of the Total Environment 484:263-275.  doi:10.1016/j.scitotenv.2013.03.107
  • Fox AL, EA Hughes, RP Trocine, J Trefry, SV Schonberg, ND McTigue, BK Lasorsa, B Konar, and LW Cooper. 2014. "Mercury in the Northeastern Chukchi Sea: Distribution patterns in seawater and sediments and biomagnification in the benthic food web." Deep-Sea Research. Part II, Topical Studies in Oceanography 102:56-67.  doi: 10.1016/j.dsr2.2013.07.012
  • Gill GA, LJ Kuo, JR Wood, and C Janke. 2014. Complete Laboratory Evaluation and Issue a Report on the Impact of Temperature on Uranium AdsorptionPNNL-23634, Pacific Northwest National Laboratory, Richland, WA. 
  • Jacobs JM, M Rhodes, CW Brown, RR Hood, A Leight, W Long, and R Wood. 2014. "Modeling and forecasting the distribution of Vibrio vulnificus in Chesapeake Bay." Journal of Applied Microbiology 117(5):1312-1327.  doi:10.1111/jam.12624
  • Johnson GE, NK Sather, JR Skalski, and D Teel. 2014. "Application of Diversity Indices to Quantify Early Life-History Diversity for Chinook Salmon." Ecological Indicators 38:170-180.  doi:10.1016/j.ecolind.2013.11.005
  • Kim J, C Tsouris, Y Oyola, C Janke, RT Mayes, S Dai, GA Gill, LJ Kuo, JR Wood, KY Choe, E Schneider, and H Lindner. 2014. "Uptake of Uranium from Seawater by Amidoxime-Based Polymeric Adsorbent: Field Experiments, Modeling, and Updated Economic Assessment." Industrial and Engineering Chemistry Research 53(14):6076-6083.  doi:10.1021/ie4039828
  • Li X, Z Deng, Y Sun, JJ Martinez, T Fu, GA McMichael, and TJ Carlson. 2014. "A 3D approximate maximum likelihood solver for localization of fish implanted with acoustic transmitters." Scientific Reports 4:Article number: 7215.  doi:10.1038/srep07215
  • Li Y, JH Yi, H Song, Q Wang, Z Yang, ND Kelley, and KS Lee. 2014. "On the Natural Frequency of Tidal Current Power Systems - A Discussion of Sea Testing." Applied Physics Letters 105(2):Article No. 023902.  doi:10.1063/1.4886797
  • Meattey DE, L Savoy, J Beuth, N Pau, K O'Brien, J Osenkowski, K Regan, BK Lasorsa, and I Johnson. 2014. "Elevated mercury levels in a wintering population of common eiders (Somateria mollissima) in the northeastern United States." Marine Pollution Bulletin 86(1-2):229-237.  doi:10.1016/j.marpolbul.2014.07.015
  • Richmond MC, JA Serkowski, LL Ebner, M Sick, RS Brown, and TJ Carlson. 2014. "Quantifying Barotrauma Risk to Juvenile Fish during Hydro-turbine Passage." Fisheries Research 154(2014):152-164.  doi:10.1016/j.fishres.2014.01.007
  • Saito T, S Brown, S Chatterjee, J Kim, C Tsouris, R Mayes, LJ Kuo, GA Gill, Y Oyola, C Janke, and S Dai. 2014. "Uranium Recovery from Seawater: Development of Fiber Adsorbents Prepared via Atom-Transfer Radical Polymerization." Journal of Materials Chemistry A 2(35):14674-14681.  doi:10.1039/C4TA03276D
  • Skalski JR, MB Eppard, GR Ploskey, MA Weiland, TJ Carlson, and RL Townsend. 2014. "Assessment of Subyearling Chinook Salmon Survival through the Federal Hydropower Projects in the Main-Stem Columbia River." North American Journal of Fisheries Management 34(4):741-752.  doi:10.1080/02755947.2014.910577
  • Thom RM, SL Southard, and AB Borde. 2014. "Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA ." Journal of Coastal Research. JCR Fall 2014(68):1-11.  doi:10.2112/SI68-001.1
  • Willingham DG, BE Naes, AJ Fahey, SE Thompson, and JM Cloutier. 2014. FY14 Progress Report for PL12-LaserSPec SIMS-PD08: Laser Photoionization of Sputtered Neutral atoms in PNNL SIMS and Applications in Nuclear Materials and Environmental AnalysesPNNL-23935, Pacific Northwest National Laboratory, Richland, WA. 
  • Windham-Myers L, J Fleck, JT Ackerman, M Marvin-DiPasquale, C Stricker, WA Heim, P Bachand, CA Eagles-Smith, GA Gill, M Stephenson, and CN Alpers. 2014. "Mercury Cycling In Agricultural and Managed Wetlands: A Synthesis of Methylmercury Production, Hydrologic Export, and Bioaccumulation from an Integrated Field Study." Science of the Total Environment 484:221-231.  doi:10.1016/j.scitotenv.2014.01.033
  • Xiao J, Z Deng, TJ Carlson, and MB Eppard. 2014. "Building better microbatteries: from fundamental research to manufacturing." SPIE Newsroom March 31, 2014:,
  • Yang Z, T Wang, and A Copping. 2014. "ARRAY OPTIMIZATION FOR TIDAL ENERGY EXTRACTION IN A TIDAL CHANNEL – A NUMERICAL MODELING ANALYSIS." In Proceedings of the 2nd Marine Energy Technology Symposium (METS2014), April 15-28, 2014, Seattle, Washington.  Ocean Renewable Energy Coalition, Gaithersburg, MD. 
  • Yang Z, and T Wang. 2014. "Hydrodynamic Modeling Analysis to Support Nearshore Restoration Projects in a Changing Climate." Journal of Marine Science and Engineering 2(1):18-32.  doi:10.3390/jmse2010018
  • Yang Z, T Wang, A Copping, and SH Geerlofs. 2014. "Modeling In-stream Tidal Energy Extraction and Its Potential Environmental Impacts." In Proceedings of the 10th European Wave and Tidal Energy Conference , vol. 2013, p. n/a.  European Wave and Tidal Energy Conference , London, United Kingdom. 
  • Yang Z, T Wang, AE Copping, and SH Geerlofs. 2014. "Modeling of In-stream Tidal Energy Development and its Potential Effects in Tacoma Narrows, Washington, USA." Ocean and Coastal Management 99:52-62.  doi:10.1016/j.ocecoaman.2014.02.010

2013

2012

  • Anderson MG, C Judd, and K Marcoe. 2012. "Rapid Characterization of Shorelines using a Georeferenced Video Mapping System." Journal of Coastal Research. JCR 28(5):1289-1296.  doi:10.2112/JCOASTRES-D-10-00186.1
  • Anderson MG, NA Johnson, KE Buenau, and CS Johnson. 2012. Missouri River Basin Explorer Web Application Technical DocumentationPNNL-21919, Pacific Northwest National Laboratory, Richland, WA. 
  • Balaguru K, P Chang, R Saravanan, and CJ Jang. 2012. "The Barrier Layer of the Atlantic Warmpool: Formation Mechanism and Influence on the Mean Climate." Tellus Series A. Dynamic Meteorology and Oceanography 64:Article No. 18162.  doi:10.3402/tellusa.v64i0.18162
  • Balaguru K, P Chang, R Saravanan, LYR Leung, Z Xu, M Li, and J Hsieh. 2012. "Ocean Barrier Layers’ Effect on Tropical Cyclone Intensification." Proceedings of the National Academy of Sciences of the United States of America 109(36):14343-14347.  doi:10.1073/pnas.1201364109
  • Brown RS, BD Pflugrath, AHA Colotelo, CJ Brauner, TJ Carlson, Z Deng, and A Seaburg. 2012. "Pathways of Barotrauma in Juvenile Salmonids Exposed to Simulated Hydroturbine Passage: Boyle’s Law vs. Henry’s Law." Fisheries Research 121-122(1):43-50.  doi:10.1016/j.fishres.2012.01.006
  • Brown RS, BD Pflugrath, TJ Carlson, and Z Deng. 2012. "The Effect of an Externally Attached Neutrally Buoyant Transmitter on Mortal Injury during Simulated Hydroturbine Passage." Journal of Renewable and Sustainable Energy 4(1):Article No. 013107.  doi:10.1063/1.3682062
  • Brown RS, TJ Carlson, AJ Gingerich, JR Stephenson, BD Pflugrath, AE Welch, M Langeslay, ML Ahmann, RL Johnson, JR Skalski, A Seaburg, and RL Townsend. 2012. "Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro-turbine passage." Transactions of the American Fisheries Society 141(1):147-157.  doi:10.1080/00028487.2011.650274
  • Crowe BJ, S Attalah, S Agrawal, P Waller, R Ryan, JM Van Wagenen, AR Chavis, J Kyndt, M Kacira, KL Ogden, and MH Huesemann. 2012. "A comparison of Nannochloropsis salina growth performance in two outdoor pond designs: conventional raceways versus the ARID pond with superior temperature management." International Journal of Chemical Engineering 2012:Article No. 920608.  doi:10.1155/2012/920608
  • Deng Z, and TJ Carlson. 2012. "Editorial: Time for green certification for all hydropower?" Journal of Renewable and Sustainable Energy 4(2):Article No. 020401. 
  • Diefenderfer HL, GE Johnson, JR Skalski, SA Breithaupt, and AM Coleman. 2012. "Application of the Diminishing Returns Concept in the Hydroecologic Restoration of Riverscapes." Landscape Ecology 27(5):671-682.  doi:10.1007/s10980-012-9713-8
  • Diefenderfer HL, GE Johnson, NK Sather, AM Coleman, KE Buenau, JD Tagestad, Y Ke, E Dawley, and JR Skalski. 2012. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2011PNNL-21202, Pacific Northwest National Laboratory, Richland, WA. 
  • Halvorsen MB, B Casper, CM Woodley, TJ Carlson, and AN Popper. 2012. "Threshold for Onset of Injury in Chinook Salmon from Exposure to Impulsive Pile Driving Sounds." PLoS One 7(6):e38968.  doi:10.1371/journal.pone.0038968
  • Halvorsen MB, B Casper, F Matthews, TJ Carlson, and AN Popper. 2012. "Effects of exposure to pile driving sounds on the lake sturgeon, Nile tilapia , and hogchoker." Royal Society of London. Proceedings B. Biological Sciences 279(1748):4705-4714.  doi:10.1098/rspb.2012.1544
  • Harvey OR, LJ Kuo, AR Zimmerman, P Louchouarn, JE Amonette, and B Herbert. 2012. "An Index-Based Approach to Assessing Recalcitrance and Soil Carbon Sequestration Potential of Engineered Black Carbons (Biochars)." Environmental Science & Technology 46(3):1415-1421.  doi:10.1021/es2040398
  • Janak JM, RS Brown, AHA Colotelo, BD Pflugrath, JR Stephenson, Z Deng, TJ Carlson, and A Seaburg. 2012. "The Effects of Neutrally Buoyant, Externally Attached Transmitters on Swimming Performance and Predator Avoidance of Juvenile Chinook Salmon." Transactions of the American Fisheries Society 141(5):1424-1432.  doi:10.1080/00028487.2012.688915
  • Johnson GE, and WS Rainey. 2012. "Eco-Design of River Fishways for Upstream Passage: Application for Hanfeng Dam, Pengxi River, China." Journal of Chongqing Normal University - Natural Science Edition 29(3):104-113. 
  • Johnson GE, WH Pearson, SL Southard, and RP Mueller. 2012. "Upstream Movement of Juvenile Coho Salmon in Relation to Environmental Conditions in a Culvert Test Bed." Transactions of the American Fisheries Society 141(6):1520-1531.  doi:10.1080/00028487.2012.699013
  • Kim TY, and T Khangaonkar. 2012. "An offline unstructured biogeochemical model (UBM) for complex estuarine and coastal environments." Environmental Modelling & Software 31(1):47-63.  doi:10.1016/j.envsoft.2011.11.010
  • Li H, Z Deng, and TJ Carlson. 2012. "Piezoelectric materials used in underwater acoustic transducers." Sensor Letters 10(3/4):679-697. 
  • Ploskey GR, DM Faber, MA Weiland, and TJ Carlson. 2012. Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at Bonneville Dam, Spring 2010PNNL-19898 Rev. 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, and TJ Carlson. 2012. Monitoring of Subyearling Chinook Salmon Survival and Passage at Bonneville Dam, Summer 2010PNNL-20095 Rev. 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, and TJ Carlson. 2012. Route-Specific Passage Proportions and Survival Rates for Fish Passing through John Day Dam, The Dalles Dam, and Bonneville Dam in 2010 and 2011PNNL-21442, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, SA Zimmerman, MJ Hennen, GW Batten, III, and TD Mitchell. 2012. Hydroacoustic Estimates of Fish Density Distributions in Cougar Reservoir, 2011PNNL-21430, Pacific Northwest National Laboratory, Richland, WA. 
  • Ren H, MB Halvorsen, Z Deng, and TJ Carlson. 2012. "An Aquatic Acoustic Metrics Interface Utility for Underwater Sound Monitoring and Analysis." Sensors 12(6):7438-7450.  doi:10.3390/s120607438
  • Vavrinec J, III, AB Borde, DL Woodruff, JM Brandenberger, RM Thom, CL Wright, and VI Cullinan. 2012. Annual Adaptive Management Report for Compensatory Mitigation at Keyport Lagoon: Mitigation of Pier B Development at the Bremerton Naval Facilities - Compensatory Mitigation at Keyport Lagoon - Naval Underwater Warfare Center Division - Keyport, WashingtonPNNL-21147 Draft, Pacific Northwest National Laboratory, Richland, WA. 
  • Wang T, and Z Yang. 2012. "A Modeling Study of Hydrodynamic Circulation in a Fjord of the Pacific Northwest." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St. Augustine, Florida, pp. 256-273.  American Society of Civil Engineering, Reston, VA. 
  • Webb-Robertson BJM, HW Kreuzer, GL Hart, J Ehleringer, JB West, GA Gill, and DC Duckworth. 2012. "Bayesian Integration of Isotope Ratios for Geographic Sourcing of Castor Beans." Journal of Biomedicine and Biotechnology 2012:Article No. 450967.  doi:10.1155/2012/450967
  • Xu J, Z Deng, TJ Carlson, and B Moore. 2012. "Target Strength of Southern Resident Killer Whales (Orcinus orca): Measurement and Modeling." Marine Technology Society Journal 46(2):74-84.  doi:10.4031/MTSJ.46.2.2
  • Borde AB, RM Kaufmann, VI Cullinan, SA Zimmerman, RM Thom, and CL Wright. 2012. Lower Columbia River and Estuary Habitat Monitoring Study, 2011 - Final ReportPNNL-21128, Pacific Northwest National Laboratory, Richland, WA. 
  • Borde AB, VI Cullinan, HL Diefenderfer, RM Thom, RM Kaufmann, SA Zimmerman, J Sagar, KE Buenau, and C Corbett. 2012. Lower Columbia River and Estuary Ecosystem Restoration Program Reference Site Study: 2011 Restoration Analysis - FINAL REPORTPNNL-21433, Pacific Northwest National Laboratory, Richland, WA. 
  • Brandenberger JM, LJ Kuo, CR Suslick, and RK Johnston. 2012. Ambient Monitoring for Sinclair and Dyes Inlets, Puget Sound, Washington: Chemical Analyses for 2012 Regional Mussel WatchPNNL-21862, Pacific Northwest National Laboratory, Richland, WA. 
  • Callaway J, AB Borde, HL Diefenderfer, VT Parker, JM Rybczyk, and RM Thom. 2012. "Pacific Coast Tidal Wetlands." Chapter 8 in Wetland Habitats of North America: Ecology and Conservation Concerns, ed. DP Batzer and AH Baldwin.  University of California Press, Berkeley, CA. 
  • Carlson TJ, RS Brown, JR Stephenson, BD Pflugrath, AHA Colotelo, AJ Gingerich, PL Benjamin, M Langeslay, ML Ahmann, RL Johnson, JR Skalski, A Seaburg, and RL Townsend. 2012. "The Influence of Tag Presence on the Mortality of Juvenile Chinook Salmon Exposed to Simulated Hydroturbine Passage: Implications for Survival Estimates and Management of Hydroelectric Facilities." North American Journal of Fisheries Management 32(2):249-261.  doi:10.1080/02755947.2012.661384
  • Carlson TJ, JL Elster, ME Jones, BE Watson, AE Copping, ML Watkins, RA Jepsen, and K Metzinger. 2012. Assessment of Strike of Adult Killer Whales by an OpenHydro Tidal Turbine BladePNNL-21177, Pacific Northwest National Laboratory, Richland, WA. 
  • Carlson TJ, MB Halvorsen, S Matzner, AE Copping, and J Stavole. 2012. Monitoring and Mitigation Alternatives for Protection of North Atlantic Right Whales during Offshore Wind Farm InstallationPNNL-21959, Pacific Northwest National Laboratory, Richland, WA. 
  • Casper B, AN Popper, F Matthews, TJ Carlson, and MB Halvorsen. 2012. "Recovery of Barotrauma Injuries in Chinook Salmon, Oncorhynchus tshawytscha from Exposure to Pile Driving Sound." PLoS One 7(6):Article No. e39593.  doi:10.1371/journal.pone.0039593
  • Colotelo AHA, BD Pflugrath, RS Brown, CJ Brauner, RP Mueller, TJ Carlson, Z Deng, ML Ahmann, and BA Trumbo. 2012. "The effect of rapid and sustained decompression on barotrauma in juvenile brook lamprey and Pacific lamprey: implications for passage at hydroelectric facilities." Fisheries Research 129–130:17–20.  doi:10.1016/j.fishres.2012.06.001
  • Copping AE, KM Blake, LA Hanna, CA Brandt, JA Ward, JM Brandenberger, GA Gill, TJ Carlson, JL Elster, ME Jones, BE Watson, RA Jepsen, and K Metzinger. 2012. Evaluating Effects of Stressors from Marine and Hydrokinetic EnergyPNNL-21885, Pacific Northwest National Laboratory, Richland, WA. 
  • Copping AE, LA Hanna, RS Butner, TJ Carlson, MB Halvorsen, CA Duberstein, S Matzner, JM Whiting, KM Blake, and J Stavole. 2012. Environmental Effects of Offshore Wind Development. Fiscal Year 2012 Progress Report PNNL-21852, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, JJ Martinez, AHA Colotelo, TK Abel, AP LeBarge, RS Brown, BD Pflugrath, RP Mueller, TJ Carlson, A Seaburg, RL Johnson, and ML Ahmann. 2012. "Development of External and Neutrally Buoyant Acoustic Transmitters for Juvenile Salmon Turbine Passage Evaluation." Fisheries Research 113(1):94–105.  doi:10.1016/j.fishres.2011.08.018
  • Duberstein CA, S Matzner, VI Cullinan, DJ Virden, JR Myers, and AR Maxwell. 2012. Automated Thermal Image Processing for Detection and Classification of Birds and Bats - FY2012 Annual ReportPNNL-21911, Pacific Northwest National Laboratory, Richland, WA. 
  • Geerlofs SH, LA Hanna, CR Judd, and KM Blake. 2012. Regulatory Assistance, Stakeholder Outreach, and Coastal and Marine Spatial Planning Activities In Support Marine and Hydrokinetic Energy Deployment: Task 2.1.7 Permitting and Planning Fiscal Year 2012 Year-End Report PNNL-21876, Pacific Northwest National Laboratory, Richland, WA. 
  • Harnish RA, GE Johnson, GA McMichael, MS Hughes, and BD Ebberts. 2012. "Effect of Migration Pathway on Travel Time and Survival of Acoustic-Tagged Juvenile Salmonids in the Columbia River Estuary." Transactions of the American Fisheries Society 141(2):507-519.  doi:10.1080/00028487.2012.670576
  • Harvey OR, B Herbert, LJ Kuo, and P Louchouarn. 2012. "Generalized Two-Dimensional Perturbation Correlation Infrared Spectroscopy reveals Mechanisms for the Development of Surface Charge and Recalcitrance in Plant-derived Biochars." Environmental Science & Technology 46(19):10641-10650.  doi:10.1021/es302971d
  • Huesemann MH, LJ Kuo, LA Urquhart, GA Gill, and G Roesijadi. 2012. "Acetone-butanol Fermentation of Marine Macroalgae." Bioresource Technology 108:305-309.  doi:10.1016/j.biortech.2011.12.148
  • Johnson GE, HL Diefenderfer, RM Thom, GC Roegner, BD Ebberts, JR Skalski, AB Borde, E Dawley, AM Coleman, DL Woodruff, SA Breithaupt, A Cameron, C Corbett, EE Donley, DA Jay, Y Ke, K Leffler, C McNeil, C Studebaker, and JD Tagestad. 2012. Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010PNNL-20296, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, MJ Hennen, SA Zimmerman, G Batten, SM Carpenter, Z Deng, T Fu, JS Hughes, JJ Martinez, GR Ploskey, IM Royer, RL Townsend, CM Woodley, J Kim, DJ Etherington, JR Skalski, TJ Carlson, AW Cushing, EJ Fisher, MJ Greiner, F Khan, TD Mitchell, B Rayamajhi, A Seaburg, and MA Weiland. 2012. Survival and Passage of Yearling Chinook Salmon and Steelhead at The Dalles Dam, Spring 2011 - FINAL REPORTPNNL-21826, Pacific Northwest National Laboratory, Richland, WA. 
  • Khan F, GE Johnson, IM Royer, JS Hughes, ES Fischer, DM Trott, and GR Ploskey. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Lookout Point Dam, 2010PNNL-20362 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Khan F, GE Johnson, IM Royer, NRJ Phillips, JS Hughes, ES Fischer, KD Ham, and GR Ploskey. 2012. Acoustic Imaging Evaluation of Juvenile Salmonid Behavior in the Immediate Forebay of the Water Temperature Control Tower at Cougar Dam, 2010PNNL-20625 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Khan F, IM Royer, GE Johnson, and KD Ham. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Detroit Dam, 2011PNNL-21577 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Khangaonkar T, BS Sackmann, W Long, T Mohamedali, and M Roberts. 2012. Puget Sound Dissolved Oxygen Modeling Study: Development of an Intermediate Scale Water Quality ModelPNNL-20384 Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Khangaonkar T, BS Sackmann, W Long, T Mohamedali, and M Roberts. 2012. "Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model ." Ocean Dynamics 62(9):1353-1379.  doi:10.1007/s10236-012-0562-4
  • Lamborg C, C Hammerschmidt, GA Gill, RP Mason, and S Gichuki. 2012. "An intercomparison of procedures for the determination of total mercury in seawater and recommendations regarding mercury speciation during GEOTRACES cruises." Limnology and Oceanography 10:90-100.  doi:10.4319/lom.2012.10.90
  • Lasorsa BK, GA Gill, and M Horvat. 2012. "Analytical Methods for Measuring Mercury in Water, Sediment and Biota." Chapter 3 in Mercury in the Environment: Pattern and Process, ed. MS Bank, pp. 24-54.  University of California Press, Berkeley, CA. 
  • Li H, Z Deng, Y Yuan, and TJ Carlson. 2012. "Design Parameters of a Miniaturized Piezoelectric Underwater Acoustic Transmitter." Sensors 12(7):9098-9109.  doi:10.3390/s120709098
  • Louchouarn P, LJ Kuo, JM Brandenberger, F Marcantonio, CR Garland, GA Gill, and VI Cullinan. 2012. "Pyrogenic inputs of anthropogenic Pb and Hg to sediments of the Hood Canal, Washington, in the 20th century: Source evidence from stable Pb isotopes and PAH signatures." Environmental Science & Technology 46(11):5772-5781.  doi:10.1021/es300269t
  • Marshall KE, EW Robinson, SM Hengel, L Pasa-Tolic, and G Roesijadi. 2012. "FRET Imaging of Diatoms Expressing a Biosilica-Localized Ribose Sensor." PLoS One 7(3):e33771 1-8.  doi:10.1371/journal.pone.0033771
  • Pearson WH, RB Deriso, RA Elston, SE Hook, KR Parker, and JW Anderson. 2012. "Hypotheses Concerning the Decline and Poor Recovery of Pacific Herring in Prince William Sound, Alaska." Reviews in Fish Biology and Fisheries 22(1):95-135.  doi:10.1007/s11160-011-9225-7
  • Pflugrath BD, RS Brown, and TJ Carlson. 2012. "Maximum Neutral Buoyancy Depth of Juvenile Chinook Salmon: Implications for Survival during Hydroturbine Passage." Transactions of the American Fisheries Society 141(2):520-525.  doi:10.1080/00028487.2012.670187
  • Ploskey GR, MA Weiland, JS Hughes, CM Woodley, Z Deng, TJ Carlson, JA Kim, IM Royer, GW Batten, III, AW Cushing, SM Carpenter, DJ Etherington, DM Faber, ES Fischer, T Fu, MJ Hennen, TD Mitchell, TJ Monter, JR Skalski, RL Townsend, and SA Zimmerman. 2012. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing Through Bonneville Dam, 2010PNNL-20835 Rev. 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Ren H, Z Deng, TJ Carlson, Y Sun, T Fu, JJ Martinez, S Matzner, and JR Myers. 2012. "Localization of Southern Resident Killer Whales Using Two Star Arrays to Support Marine Renewable Energy." In OCEANS 2012 MTS/IEEE, October 14-19, 2012, Hampton Roads, Virginia.  The Institute of Electrical and Electronics Engineers, Piscataway, NJ.  doi:10.1109/OCEANS.2012.6405010
  • Sather NK, A Storch, GE Johnson, DJ Teel, JR Skalski, AJ Bryson, RM Kaufmann, DL Woodruff, J Blaine, DR Kuligowski, RK Kropp, and EM Dawley. 2012. Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2011 - FINAL ANNUAL REPORTPNNL-21194 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GR Ploskey, and TJ Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at Bonneville Dam, Spring 2011PNNL-21175, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GR Ploskey, and TJ Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at Bonneville Dam, Spring 2011PNNL-21175 Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GE Johnson, GR Ploskey, and TJ Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dales Dam, Spring 2011PNNL-21124, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GE Johnson, GR Ploskey, and TJ Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dalles Dam, Spring 2011PNNL-21124 Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, MA Weiland, CM Woodley, JS Hughes, and TJ Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, Spring 2011PNNL-21176, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, MA Weiland, CM Woodley, JS Hughes, and TJ Carlson. 2012. Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, Spring 2011PNNL-21176 Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Thom RM, HL Diefenderfer, J Vavrinec, III, and AB Borde. 2012. "Restoring Resiliency: Case Studies from Pacific Northwest Estuarine Eelgrass (Zostera marina L.) Ecosystems." Estuaries and Coasts 35(1):78-91.  doi:10.1007/s12237-011-9430-6
  • Van Wagenen JM, TW Miller, SJ Hobbs, PW Hook, BJ Crowe, and MH Huesemann. 2012. "Effects of Light and Temperature on Fatty Acid Production in Nannochloropsis Salina." Energies 5(3):731 - 740. 
  • Weiland MA, GR Ploskey, JS Hughes, CM Woodley, Z Deng, TJ Carlson, JR Skalski, and RL Townsend. 2012. Monitoring of Juvenile Subyearling Chinook Salmon Survival and Passage at John Day Dam, Summer 2010PNNL-22014, Pacific Northwest National Laboratory, Richland, WA. 
  • Weiland MA, GR Ploskey, JS Hughes, CM Woodley, Z Deng, TJ Carlson, JR Skalski, and RL Townsend. 2012. Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at John Day Dam, Spring 2010PNNL-22015, Pacific Northwest National Laboratory, Richland, WA. 
  • Woodruff DL, IR Schultz, KE Marshall, JA Ward, and VI Cullinan. 2012. Effects of Electromagnetic Fields on Fish and Invertebrates: Task 2.1.3: Effects on Aquatic Organisms - Fiscal Year 2011 Progress Report - Environmental Effects of Marine and Hydrokinetic EnergyPNNL-20813 Final, Pacific Northwest National Laboratory, Richland, WA. 
  • Xu J, Z Deng, JJ Martinez, TJ Carlson, JR Myers, and MA Weiland. 2012. "Broadband Acoustic Environment at a Tidal Energy Site in Puget Sound." Marine Technology Society Journal 46(2):65-73.  doi:10.4031/MTSJ.46.2.1
  • Yang Z, and T Wang. 2012. "Hydrodynamic Modeling Analysis of Tidal Wetland Restoration in Snohomish River, Washington." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St Augustine, Florida, ed. ML Spaulding, pp. 139-155.  American Society of Civil Engineers, Reston, VA.  doi:10.1061/9780784412411.00008
  • Yang Z, T Wang, T Khangaonkar, and SA Breithaupt. 2012. "Integrated Modeling of Flood Flows and Tidal Hydrodynamics over a Coastal Floodplain ." Environmental Fluid Mechanics 12(1):63-80.  doi:10.1007/s10652-011-9214-3

2011

2010

2009

  • Brown RS, TJ Carlson, AE Welch, JR Stephenson, CS Abernethy, BD Ebberts, M Langeslay, ML Ahmann, DH Feil, JR Skalski, and RL Townsend. 2009. "Assessment of Barotrauma from Rapid Decompression of Depth-Acclimated Juvenile Chinook Salmon Bearing Radiotelemetry Transmitters." Transactions of the American Fisheries Society 138(6):1285-1301 . 
  • Diefenderfer HL, KL Sobocinski, RM Thom, CW May, AB Borde, SL Southard, J Vavrinec, III, and NK Sather. 2009. "Multiscale Analysis of Restoration Priorities for Marine Shoreline Planning." Environmental Management 44(4 ):712-731.  doi:10.1007/s00267-009-9298-4
  • Halvorsen MB, TJ Carlson, and AN Popper. 2009. "Assessment of Cumulative Sound Exposure Level as Criterion for Exposure of Fish to Impulsive Sound." Journal of the Acoustical Society of America 125(4):Article No. 2488.  doi:10.1121/1.4783301
  • Huesemann MH, and JR Benemann. 2009. "Biofuels from Microalgae: Review of Products, Processes and Potential, with Special Focus on Dunaliella sp. ." Chapter 19 in The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology, vol. 14, ed. A. Ben-Amotz, J.E.W. Polle, and D.V. Subba Rao, pp. 445-474.  Science Publishers, New Hampshire. 
  • Johnson GE. 2009. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY09 Annual ReportPNNL-18907, Pacific Northwest National Laboratory, Richland, WA. 
  • Sather NK, GE Johnson, A Storch, D Teel, JR Skalski, TA Jones, EM Dawley, SA Zimmerman, AB Borde, C Mallette, and R Farr. 2009. Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2008PNNL-18450, Pacific Northwest National Laboratory, Richland, WA. 
  • Weiland MA, J Kim, WT Nagy, and GE Johnson. 2009. Evaluation of Steelhead Kelt Passage into the Bonneville Dam Second Powerhouse Corner Collector Prior to the Juvenile Migration Seasons, 2007 and 2008PNNL-18323, Pacific Northwest National Laboratory, Richland, WA. 
  • Yang Z, and TP Khangaonkar. 2009. "Modeling Tidal Circulation and Stratification in Skagit River Estuary Using an Unstructured Grid Ocean Model ." Ocean Modelling 28(1-3):34-49. (special issue). 
  • Arntzen EV, DR Geist, KJ Murray, J Vavrinec, III, EM Dawley, and DE Schwartz. 2009. "Influence of the Hyporheic Zone on Supersaturated Gas Exposure to Incubating Chum Salmon." North American Journal of Fisheries Management 29(6):1714-1727.  doi:10.1577/M08-212.1
  • Arntzen EV, KD Hand, KM Carter, DR Geist, KJ Murray, EM Dawley, VI Cullinan, RA Elston, and J Vavrinec, III. 2009. Total Dissolved Gas Effects on Incubating Chum Salmon Below Bonneville DamPNNL-18081, Pacific Northwest National Laboratory, Richland, WA. 
  • Barnett JM, VI Cullinan, DS Barnett, TLT Trang-Le, M Bliss, LR Greenwood, and MY Ballinger. 2009. Results of Self-Absorption Study on the Versapor 3000 Filters for Radioactive Particulate Air SamplingPNNL-SA-62011 Rev. 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Barnett JM, VI Cullinan, DS Barnett, TLT Trang-Le, M Bliss, LR Greenwood, and MY Ballinger. 2009. "Results of a Self-Absorption Study on the Versapor 3000 47-mm Filters for Radioactive Particulate Air Stack Sampling." Health Physics 97((5), supplement):S161-S168. 
  • Brown KH, IR Schultz, and JJ Nagler. 2009. "Lack of a heritable reproductive defect in the offspring of male rainbow trout exposed to the environmental estrogen 17alpha-ethynylestradiol." Aquatic Toxicology 91(1):71-74. 
  • Estes MG, M Al-Hamdan, RM Thom, D Quattrochi, DL Woodruff, C Judd, J Ellis, B Watson, H Rodriguez, and H Johnson. 2009. "Watershed and Hydrodynamic Modeling for Evaluating the Impact of Land Use Change on Submerged Aquatic Vegetation and Seagrasses in Mobile Bay." In OCEANS 2009: MTS/IEEE Biloxi - Marine Tehcnology for Our Future: Global and Local Challenges.  IEEE, Piscataway, NJ. 
  • Huesemann MH, TS Hausmann, TJ Fortman, RM Thom, and VI Cullinan. 2009. "In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina) ." Ecological Engineering 35(10):1395-1404. 
  • Johnson GE, HL Diefenderfer, AB Borde, EM Dawley, BD Ebberts, GC Roegner, MT Russell, JR Skalski, RM Thom, J Vavrinec, III, and SA Zimmerman. 2009. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2008PNNL-18677, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, MC Richmond, JB Hedgepeth, GR Ploskey, MG Anderson, Z Deng, F Khan, RP Mueller, CL Rakowski, NK Sather, JA Serkowski, and JR Steinbeck. 2009. Smolt Responses to Hydrodynamic Conditions in Forebay Flow Nets of Surface Flow Outlets, 2007PNNL-17387, Pacific Northwest National Laboratory, Richland, WA. 
  • Judd C, KS Judd, TC Gulbransen, and RM Thom. 2009. Summary of Training Workshop on the Use of NASA tools for Coastal Resource Management in the Gulf of MexicoPNNL-18326, Pacific Northwest National Laboratory, Richland, WA. 
  • Kennedy A, JA Steevens, GR Lotufo, JD Farrar, MR Reiss, RK Kropp, J Doi, and T Bridges. 2009. "A comparison of acute and chronic toxicity methods for marine sediments." Marine Environmental Research 68(3):118-127. 
  • Khan F, GE Johnson, and MA Weiland. 2009. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam 2008-2009PNNL-18590, Pacific Northwest National Laboratory, Richland, WA. 
  • Lema S, JT Dickey, IR Schultz, and P Swanson. 2009. "Thyroid hormone regulation of mRNAs encoding thyrotropin beta-subunit, glycoprotein alpha-subunit, and thyroid hormone receptors alpha and beta in brain, pituitary gland, liver, and gonads of an adult teleost, Pimephales promelas." The Journal of Endocrinology 202(1):43-54. 
  • Ploskey GR, MA Weiland, DM Faber, Z Deng, GE Johnson, JS Hughes, SA Zimmerman, TJ Monter, AW Cushing, MC Wilberding, RE Durham, RL Townsend, JR Skalski, RA Buchanan, J Kim, ES Fischer, MM Meyer, RL McComas, and J Everett. 2009. Survival Rates of Juvenile Salmonids Passing Through the Bonneville Dam and Spillway in 2008PNNL-18748, Pacific Northwest National Laboratory, Richland, WA. 
  • Richmond MC, Z Deng, CA McKinstry, RP Mueller, TJ Carlson, and DD Dauble. 2009. "Response Relationship Between Juvenile Salmon and an Autonomous Sensor in Turbulent Flows." Fisheries Research 97(1-2):134-139.  doi:10.1016/j.fishres.2009.01.011
  • Thom RM, MG Anderson, D Tyre, and CA Fleming. 2009. Adaptive Management for Decision Making at the Program and Project Levels of the Missouri River Recovery ProgramPNNL-18261, Pacific Northwest National Laboratory, Richland, WA. 
  • Weiland MA, GR Ploskey, JS Hughes, Z Deng, T Fu, TJ Monter, GE Johnson, F Khan, MC Wilberding, AW Cushing, SA Zimmerman, DM Faber, RE Durham, RL Townsend, JR Skalski, J Kim, ES Fischer, and MM Meyer. 2009. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam with Emphasis on the Prototype Surface Flow Outlet, 2008PNNL-18890, Pacific Northwest National Laboratory, Richland, WA. 
  • Weisbrod AV, J Sahi, H Segner, MO James, JW Nichols, IR Schultz, S Erhardt, C Cowan-Ellsberry, M Bonnell, and B Hoeger. 2009. "The State of In Vitro Science for Use in Bioaccumulation Assessments for Fish." Environmental Toxicology and Chemistry 28(1):86-96.  doi:10.1897/08-015.1
  • Yang Z, T Khangaonkar, JM Chase, and T Wang. 2009. "Puget Sound Operational Forecast System - A Real-time Predictive Tool for Marine Resource Management and Emergency Responses." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, WA, ed. ML Spaulding, pp. 356-372.  American Society of Civil Engineers (ASCE), Reston, VA.  doi:10.1061/41121(388)22

2008

  • Diefenderfer HL, AM Coleman, AB Borde, and IA Sinks. 2008. "Hydraulic Geometry and Microtopography of Tidal Freshwater Forested Wetlands and Implications for Restoration, Columbia River, U.S.A." International Journal of Ecohydrology & Hydrobiology 8(2-4):339-361.  doi:10.2478/v10104-009-0027-7
  • Diefenderfer HL, and DR Montgomery. 2008. "Pool spacing, channel morphology, and the restoration of tidal forested wetlands of the Columbia River, U.S.A." Restoration Ecology 17(1):158-168.  doi:10.1111/j.1526-100X.2008.00449.x
  • Huesemann MH, and JA Huesemann. 2008. "Will Progress in Science and Technology Avert or Accelerate Global Collapse? A Critical Analysis and Policy Recommendations." Environment, Development and Sustainability 10(6):787-825.  doi:10.1007/s10668-007-9085-4
  • Huesemann MH. 2008. "Ocean Fertilization and Other Climate Change Mitigation Strategies: An Overview." Marine Ecology Progress Series 364:243-250.  doi:10.3354/meps07545
  • Johnson GE, and GB Sutherland. 2008. Proceedings of the Columbia River Estuary Conference on Ecosystem Restoration.  Battelle Press, Richland, WA. 
  • Johnson GE, B Ebberts, AE Giorgi, K Kuhn, R Lee, JH Plump, DA Stensby, and CE Sweeney. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Fish at Bonneville Dam’s Second Powerhouse, Columbia River." In Proceedings of the 4th American Fisheries Society Symposium: Fisheries Bioengineering, ed. SV Amaral, D Mathur, EP Taft, pp. 203-216.  American Fisheries Society, Bethesda, MD. 
  • Johnson GE, BD Ebberts, AE Giorgi, K Kuhn, RT Lee, JH Plump, DA Stensby, and CE Sweeney. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Salmonids at Bonneville Dam’s Second Powerhouse, Columbia River." In Advances in Fisheries Bioengineering: 4th Fisheries Bioengineering Symposium, Bethesda, Maryland, ed. SV Amaral, D Mathur, EP Taft, pp. 203-216.  American Fisheries Society, Bethesda, MD. 
  • Ploskey GR, JS Hughes, F Khan, J Kim, BL Lamarche, GE Johnson, EY Choi, DM Faber, MC Wilberding, Z Deng, MA Weiland, SA Zimmerman, ES Fischer, and AW Cushing. 2008. Optimization of Concurrent Deployments of the Juvenile Salmon Acoustic Telemetry System and Other Hydroacoustic Equipment at John Day DamPNNL-17837, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, JS Hughes, SA Zimmerman, RE Durham, ES Fischer, J Kim, RL Townsend, JR Skalski, and RL McComas. 2008. Acoustic Telemetry Studies of Juvenile Chinook Salmon Survival at the Lower Columbia Projects in 2006PNNL-16560, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, JS Hughes, SA Zimmerman, RE Durham, ES Fischer, J Kim, RL Townsend, JR Skalski, RA Buchanan, and RL McComas. 2008. Survival of Juvenile Chinook Salmon Passing the Bonneville Dam Spillway in 2007PNNL-18113, Pacific Northwest National Laboratory, Richland, WA. 
  • Roesijadi G, S Rezvankhah, A Perez-Matus, A Mitelberg, K Torruellas, and PA Van Veld. 2008. "Dietary cadmium and benzo(a)pyrene increased intestinal metallothionein expression in the fish Fundulus heteroclitus." Marine Environmental Research 67(1):25-30. 
  • Schultz IR, KH Brown, and JJ Nagler. 2008. "Effect of parental exposure to trenbolone and brominated flame retardant BDE-47 on fertility in rainbow trout (Oncorhynchus mykiss)." Marine Environmental Research 66(1):47-49.  doi:10.1016/j.marenvres.2008.02.018
  • Tagestad JD, J Bolte, M Guzy, DL Woodruff, K Humes, V Walden, MS Wigmosta, N Glenn, D Ames, R Rope, D Martin, and S Sandgathe. 2008. PACIFIC NORTHWEST REGIONAL COLLABORATORY ANNUAL REPORT FOR SYNERGY VII (2007)PNNL-17271, Pacific Northwest National Laboratory, Richland, WA. 
  • Thom RM. 2008. "A.W.D., Larkum, R.J. Orth, C.M. Duarte (eds.), 2006, Seagrasses: Biology, Ecology and Conservation, Springer, ISBN: 978-1-4020-2942-4 (hardback), US$ 99.00, 691 pages." Journal of Experimental Marine Biology and Ecology 354(1):160. 
  • Yang Z, and TP Khangaonkar. 2008. "Modeling of Coastal Effluent Transport: an Approach to Linking of Far-field and Near-field Models." Acta Oceanologica Sinica 27:21-30. 
  • Yang Z, and TP Khangaonkar. 2008. "Modeling of Salt Intrusion, Intertidal Mixing, and Circulation in a Braided Estuary." In Surface Water Modeling, vol. 52, pp. 171-180.  Journal of Coastal Research, Boca Raton, FL. 
  • Arntzen EV, KD Hand, DR Geist, KJ Murray, J Panther, VI Cullinan, EM Dawley, and RA Elston. 2008. Effects of Total Dissolved Gas on Chum Salmon Fry Incubating in the Lower Columbia River PNNL-17132, Pacific Northwest National Laboratory, Richland, WA. 
  • Bellgraph BJ, RS Brown, JR Stephenson, AE Welch, KA Deters, and TJ Carlson. 2008. "Healing Rate of Swim Bladders in Rainbow Trout." Transactions of the American Fisheries Society 137(6):1791-1794.  doi:10.1577/T07-167.1
  • Brandenberger JM, CR Suslick, and RK Johnston. 2008. Biological Sampling and Analysis in Sinclair and Dyes Inlets, Washington: Chemical Analyses for 2007 Puget Sound Biota StudyPNNL-17948, Pacific Northwest National Laboratory, Richland, WA. 
  • Brown KH, IR Schultz, J Cloud, and JJ Nagler. 2008. "Aneuploid sperm formation in rainbow trout exposed to the environmental estrogen 17 alpha-ethynylestradiol." Proceedings of the National Academy of Sciences of the United States of America 105(50):19786-19791. 
  • Burkholder BK, GE Grant, R Haggerty, TP Khangaonkar, and PJ Wampler. 2008. "Influence of hyporheic flow and geomorphology on temperature of a large, gravel-bed river, Clackamas River, Oregon, USA." Hydrological Processes 22(7):941-953. 
  • Carlson TJ, JP Duncan, and Z Deng. 2008. Data Overview for Sensor Fish Samples Acquired at Ice Harbor, John Day, and Bonneville II Dams in 2005, 2006, and 2007 PNNL-17398, Pacific Northwest National Laboratory, Richland, WA. 
  • Chvala WD, Jr, AE Solana, JC States, WM Warwick, MR Weimar, and DR Dixon. 2008. Renewable Energy Opportunities at White Sands Missile Range, New MexicoPNNL-20221, Pacific Northwest National Laboratory, Richland, WA. 
  • Chvala WD, Jr, WM Warwick, DR Dixon, AE Solana, MR Weimar, JC States, and RW Reilly. 2008. Renewable Energy Opportunities at Fort Hood, TexasPNNL-20219, Pacific Northwest National Laboratory, Richland, WA. 
  • Diaz RJ, DC Rhoads, JA Blake, RK Kropp, and KE Keay. 2008. "Long-term Trends of Benthic Habitats Related to Reduction in Wastewater Discharge to Boston Harbor." Estuaries and Coasts 31(6):1184-1197.  doi:10.1007/s12237-008-9094-z
  • Heilmayer O, JJ DiGialleonardo, L Qian, and G Roesijadi. 2008. "Stress tolerance of a subtropical Crassostrea virginica population to the combined effects of temperature and salinity." Estuarine, Coastal and Shelf Science 79(1):179-185. 
  • Hibler LF, AR Maxwell, LM Miller, NP Kohn, DL Woodruff, M Montes, and MA Moline. 2008. "Improved fine-scale transport model performance using AUV and HSI feedback in a tidally dominated system." Journal of Geophysical Research. C. (Oceans) 113:Art. no. C08036.  doi:10.1029/2008JC004739
  • Hook SE, ME Cobb, JT Oris, and JW Anderson. 2008. "Gene Sequences for Cytochromes p450 1A1 and 1A2: The Need for Biomarker Development in Sea Otters (Enhydra lutris)." Comparative Biochemistry and Physiology Part B: Biochemistry & Molecular Biology 151(3):336-348.  doi:10.1016/j.cbpb.2008.08.003
  • Hook SE, AD Skillman, B Gopalan, JA Small, and IR Schultz. 2008. "Gene expression profiles in rainbow trout, Onchorynchus mykiss, exposed to a simple chemical mixture." Toxicological Sciences 102(1):42-60.  doi:10.1093/toxsci/kfm293
  • Huesemann MH, TS Hausmann, R Bartha, M Aksoy, JC Weissman, and J Benemann. 2008. "Biomass Productivities in Wild Type and Pigment Mutant of Cyclotella sp. (Diatom)." Applied Biochemistry and Biotechnology 157(3):507-526. 
  • Johnson GE, GR Ploskey, J Hedgepeth, F Khan, RP Mueller, WT Nagy, MC Richmond, and MA Weiland. 2008. "Reducing the Impacts of Hydroelectric Dams on Juvenile Anadromous Fishes: Bioengineering Evaluations Using Acoustic Imaging in the Columbia River, USA." In Dams: Impacts, Stability and Design, ed. WP Hayes & MC Barnes, pp. 1-48.  Nova Science Publishers, Hauppauge, NY. 
  • Johnson GE, HL Diefenderfer, AB Borde, EM Dawley, BD Ebberts, DA Putman, GC Roegner, M Russell, JR Skalski, RM Thom, and J Vavrinec, III. 2008. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2007PNNL-17437, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, HL Diefenderfer, BD Ebberts, C Tortorici, T Yerxa, J Leary, and JR Skalski. 2008. Research, Monitoring, and Evaluation for the Federal Columbia River Estuary ProgramPNNL-17300, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, and HL Diefenderfer. 2008. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY08 Annual ReportPNNL-17811, Pacific Northwest National Laboratory, Richland, WA. 
  • Khangaonkar TP, Z Yang, J Paik, and F Sotiropoulos. 2008. "Simulation of Hydrodynamics at Stratified Reservoirs Using a Staged Modeling Approach." Journal of Coastal Research. JCR (Special Issue: 52):79-86. 
  • Khangaonkar TP, and Z Yang. 2008. "DYNAMIC RESPONSE OF STREAM TEMPERATURES TO BOUNDARY AND INFLOW PERTURBATION DUE TO RESERVOIR OPERATIONS." River Research and Applications 24(4):420-433.  doi:10.1002/rra.1088
  • Lema S, JT Dickey, IR Schultz, and P Swanson. 2008. "Dietary exposure to 2,2´,4,4´-tetrabromodiphenyl ether (PBDE 47) alters thyroid status and thyroid hormone-regulated gene transcription in the pituitary and brain." Environmental Health Perspectives 116(12):1694-1699. 
  • Li T, IR Schultz, DA Keys, JL Campbell, and JW Fisher. 2008. "Quantitative evaluation of dichloroacetic acid kinetics in human: a physiologically based pharmacokinetic modeling investigation." Toxicology 245(1-2):35-48.  doi:10.1016/j.tox.2007.12.010
  • Mueller RP, SS Southard, CW May, WH Pearson, and VI Cullinan. 2008. "Juvenile Coho Salmon Leaping Ability and Behavior in an Experimental Culvert Test Bed." Transactions of the American Fisheries Society 137(4):941-950.  doi:10.1577/T06-244.1
  • Roegner GC, HL Diefenderfer, AB Borde, RM Thom, EM Dawley, AH Whiting, SA Zimmerman, and GE Johnson. 2008. Protocols for Monitoring Habitat Restoration Projects in the Lower Columbia River and EstuaryPNNL-15793, Pacific Northwest National Laboratory, Richland, WA. 
  • Salice CJ, TJ Miller, and G Roesijadi. 2008. "Demographic responses to multi-generation cadmium exposure in two strains of the freshwater gastropod, Biomphalaria glabrata." Archives of Environmental Contamination and Toxicology doi:10.1007/s00244-008-9203-9
  • Sanders RD, KH Coale, GA Gill, AH Andrews, and M Stephenson. 2008. "Recent increase in atmospheric deposition of mercury to California aquatic systems inferred from a 300-year geochronological assessment of lake sediments." Applied Geochemistry 23(3):399-407.  doi:10.1016/j.apgeochem.2007.12.021
  • Sobocinski KL, GE Johnson, NK Sather, A Storch, TA Jones, C Mallette, EM Dawley, JR Skalski, D Teel, and P Moran. 2008. Ecology of Juvenile Salmonids in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2007PNNL-17395, Pacific Northwest National Laboratory, Richland, WA. 
  • Solana AE, JC States, WD Chvala, Jr, MR Weimar, and DR Dixon. 2008. "Renewable Energy Opportunities for the Army." In Proceedings of the World Energy Engineering Congress.  Farmont Press Inc., Lilburn, GA. 
  • Tang H, J Paik, F Sotiropoulos, and TP Khangaonkar. 2008. "Three-Dimensional Numerical Modeling of Initial Mixing of Thermal Discharges at Real-Life Configurations." Journal of Hydraulic Engineering 134(9):1210-1224.  doi:10.1061/(ASCE)0733-9429(2008)134:9(1210)
  • Thom RM, SL Southard, AB Borde, and P Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31(5):969-980.  doi:10.1007/s12237-008-9082-3
  • Thom RM, SS Southard, AB Borde, and P Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31(5):969-980.  doi:10.1007/s12237-008-9082-3

2007

  • Blanton ML, and JL Specker. 2007. "The Hypothalamic-Pituitary-Thyroid (HPT) Axis in Fish and Its Role in Fish Development and Reproduction." Critical Reviews in Toxicology 37(1-2):97-115. 
  • Brown RS, TJ Carlson, AE Welch, JR Stephenson, CS Abernethy, CA McKinstry, and MH Theriault. 2007. Assessment of Barotrauma Resulting from Rapid Decompression of Depth Acclimated Juvenile Chinook Salmon Bearing Radio Telemetry TransmittersPNNL-16790, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, TJ Carlson, JP Duncan, and MC Richmond. 2007. "Applications of the Sensor Fish Technology." Hydro Review 26(5):10-14. 
  • Deng Z, TJ Carlson, JP Duncan, and MC Richmond. 2007. "Six-degree-of-freedom Sensor Fish design and instrumentation." Sensors 7(12):3399-3415. 
  • Johnson GE, JW Beeman, I Duran, and A Puls. 2007. Synthesis of Juvenile Salmonid Passage Studies at The Dalles Dam, Volume II, 2001-05PNNL-16443, Pacific Northwest National Laboratory, Richland, WA. 
  • Judd KS, C Judd, JA Engel-Cox, T Gulbransen, MG Anderson, DL Woodruff, RM Thom, M Guzy, hardin, and M Estes. 2007. Gulf of Mexico Regional Collaborative Final ReportPNNL-17180, Pacific Northwest National Laboratory, Richland, WA. 
  • Roesijadi G, S Rezvankhah, DM Binninger, and H Weissbach. 2007. "Ecdysone Induction of MsrA Protects Against Oxidative Stress in Drosophila." Biochemical and Biophysical Research Communications 354(2):511-516. 
  • Schultz IR, AD Skillman, and DL Woodruff. 2007. "Domoic Acid Excretion In Dungeness Crabs, Razor Clams and Mussels." Marine Environmental Research 66(1):21-23.  doi:Stenner, Robert D
  • Schultz IR, SM Reed, AV Pratt, and AD Skillman. 2007. "Quantitative oral dosing of water soluble and lipophilic contaminants in the Japanese medaka (Oryzias latipes)." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145(1):86-95. 
  • Vavrinec J, III, NP Kohn, KD Hall, and BA Romano. 2007. Effects of burial by the disposal of dredged materials from the Columbia River on Pacific razor clams (Siliqua patula)PNNL-16350, Pacific Northwest National Laboratory, Richland, WA. 
  • Vavrinec J, III, WH Pearson, NP Kohn, JR Skalski, C Lee, KD Hall, BA Romano, MC Miller, and TP Khangaonkar. 2007. Laboratory Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Material from the Columbia RiverPNNL-16482, Pacific Northwest National Laboratory, Richland, WA. 
  • Yang Z, and TP Khangaonkar. 2007. Development of a Hydrodynamic Model of Puget Sound and Northwest Straits PNNL-17161, Pacific Northwest National Laboratory, Richland, WA. 
  • Brandenberger JM, CW May, VI Cullinan, RK Johnston, DE Leisle, B Beckwith, G Sherrell, D Mettallo, and R Pingree. 2007. "Contaminant Concentrations in Storm Water Entering the Sinclair/Dyes Inlet Subasin of the Puget Sound, USA, During Storm Event and Baseflow Conditions." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26–29, 2007, p. 9 pages.  Puget Sound Action Team, Olympia, WA. 
  • Brown KH, IR Schultz, and JJ Nagler. 2007. "Reduced embryonic survival in rainbow trout resulting from paternal exposure to the environmental estrogen 17 alpha- ethynylestradiol during late sexual maturation ." Reproduction 134(5):659-666.  doi:10.1530/REP-07-0169
  • Cai YJ, JR Rooker, GA Gill, and JP Turner. 2007. "Bioaccumulation of mercury in pelagic fishes from the northern Gulf of Mexico." Canadian Journal of Fisheries and Aquatic Sciences 64(3):458-469.  doi:10.1139/F07-017
  • Cullinan VI, CW May, JM Brandenberger, C Judd, and RK Johnston. 2007. "Development of An Empirical Water Quality Model for Stormwater Based on Watershed Land Use in Puget Sound." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26–29, 2007, p. 8 pages.  Puget Sound Action Team, Olympia, WA. 
  • Dauble DD, Z Deng, MC Richmond, RA Moursund, TJ Carlson, CL Rakowski, and JP Duncan. 2007. Biological Assessment of the Advanced Turbine Design at Wanapum Dam, 2005PNNL-16682, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, GR Guensch, MC Richmond, MA Weiland, and TJ Carlson. 2007. "Prototype Measurements of Pressure Fluctuations in The Dalles Dam Stilling Basin." Journal of Hydraulic Research 45(5):674–678. 
  • Deng Z, JA Serkowski, T Fu, TJ Carlson, and MC Richmond. 2007. Synthesis of Sensor Fish Data for Assessment of Fish Passage Conditions at Turbines, Spillways, and Bypass Facilities – Phase 1: The Dalles Dam Spillway Case StudyPNNL-17148, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, TJ Carlson, GR Ploskey, MC Richmond, and DD Dauble. 2007. "Evaluation of Blade-Strike Models for Estimating the Biological Performance of Kaplan Turbines." Ecological Modelling 208(2-4):165-176.  doi:10.1016/j.ecolmodel.2007.05.019
  • Dresser TJ, CL Dotson, RK Fisher, MJ Graf, MC Richmond, CL Rakowski, TJ Carlson, D Mathur, and PG Heisey. 2007. "Wanapum Dam Advanced Hydro Turbine Upgrade Project: Part 2 - Evaluation of Fish Passage Test Results Using Computational Fluid Dynamics." In HydroVision 2006, July 31-August 4, 2006 Portland, Oregon, USA, p. 14 pages.  HCI Publications, Kansas City, MO. 
  • Driver CJ, DL Strenge, YF Su, VI Cullinan, RS Herrington, DL Saunders, and LE Rogers. 2007. Methods for Assessing the Impact of Fog Oil Smoke on Availability, Palatability, & Food Quality of Relevant Life Stages of Insects for Threatened and Endangered SpeciesPNNL-16534, Pacific Northwest National Laboratory, Richland, WA. 
  • Duberstein CA, KD Ham, DD Dauble, and GE Johnson. 2007. The Independent Technical Analysis ProcessPNNL-16507, Pacific Northwest National Laboratory, Richland, WA. 
  • Frick WE, TP Khangaonkar, AC Sigleo, and Z Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74(1-2):1-11.  doi:10.1016/j.ecss.2007.02.019
  • Fritz BG, NP Kohn, TJ Gilmore, D McFarland, EV Arntzen, RD Mackley, GW Patton, DP Mendoza, and AL Bunn. 2007. Investigation of the Hyporheic Zone at the 300 Area,Hanford Site PNNL-16805, Pacific Northwest National Laboratory, Richland, WA. 
  • Han S, RD Lehman, KY Choe, and GA Gill. 2007. "Chemical and physical speciation of mercury in Offatts Bayou: A seasonally anoxic bayou in Galveston Bay." Limnology and Oceanography 52(4):1380-1392. 
  • Heim WA, KH Coale, M Stephenson, KY Choe, GA Gill, and C Foe. 2007. "Spatial and Habitat-Based Variations in Total and Methyl Mercury Concentrations in Surficial Sediments in the San Francisco Bay-Delta." Environmental Science & Technology 41(10):3501-3507. 
  • Huerta Vazquez AI, and GA Gill. 2007. "Determination of the Efficiency of Mixed-Acid Digestions of Sediments." Journal of Undergraduate Research VII:150. 
  • Johnson GE, AB Borde, E Dawley, HL Diefenderfer, BD Ebberts, DA Putman, GC Roegner, RM Thom, J Vavrinec, III, and AH Whiting. 2007. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006PNNL-16561, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, and HL Diefenderfer. 2007. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY07 Annual Report PNNL-16947, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, F Khan, JR Skalski, CL Rakowski, MC Richmond, and JA Serkowski. 2007. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Spillway, 2006PNNL-16458, Pacific Northwest National Laboratory, Richland, WA. 
  • Jones ME, LM Miller, DL Woodruff, and DW Ewert. 2007. "Mapping of Submerged Aquatic Vegetation Using Autonomous Underwater Vehicles in Nearshore Regions." In Oceans 2007, pp. 1450-1456.  IEEE , Piscataway, NJ.  doi:10.1109/OCEANS.2007.4449331
  • Judd C, DL Woodruff, RM Thom, MG Anderson, and AB Borde. 2007. Restoration Prioritization Toolset: Documentation and User’s Guides 2007PNNL-17054, Pacific Northwest National Laboratory, Richland, WA. 
  • McKinstry CA, TJ Carlson, and RS Brown. 2007. Derivation of Mortal Injury Metric for Studies of Rapid Decompression of Depth-Acclimated Physostomous FishPNNL-17080, Pacific Northwest National Laboratory, Richland, WA. 
  • Moline MA, DL Woodruff, and NR Evans. 2007. "Optical Delineation of Benthic Habitat Using an Autonomous Underwater Vehicle." Journal of Field Robotics 24(6):461-471.  doi:10.1002/rob.20176
  • Nichols JW, S Erhardt, S Dyer, MO James, M Moore, K Plotzke, H Segner, IR Schultz, K Thomas, L Vasiluk, and AV Weisbrod. 2007. "Use of In Vitro Absorption, Distribution, Metabolism, and Excretion (ADME) Data in Bioaccumulation Assessments for Fish." Human and Ecological Risk Assessment 13(6):1164-1191. 
  • Rensel JE, DA Kiefer, JR Forster, DL Woodruff, and NR Evans. 2007. "Offshore finfish mariculture in the Strait of Juan de Fuca." Suisan Sogo Kenkyu Senta Kenkyu Hokoku. Bulletin of Fisheries Research Agency 19:113-129. 
  • Richmond MC, TJ Carlson, JA Serkowski, CB Cook, JP Duncan, and WA Perkins. 2007. Characterizing the Fish Passage Environment at The Dalles Dam Spillway: 2001-2004PNNL-16521, Pacific Northwest National Laboratory, Richland, WA. 
  • Richmond MC, Z Deng, GR Guensch, H Tritico, and WH Pearson. 2007. "Mean Flow and Turbulence Characteristics of a Full-Scale Spiral Corrugated Culvert with Implications to Fish Passage." Ecological Engineering 30(4):333-340.  doi:10.1016/j.ecoleng.2007.04.011
  • Thom RM, and C Judd. 2007. "Model for Coastal Restoration ." In Gulf of Mexico Regional Collaborative (GOMRC) User Group.  Pacific Northwest National Laboratory, Richland, WA. 
  • Warnken KW, PH Santschi, KA Roberts, and GA Gill. 2007. "The cycling and oxidation pathways of organic carbon in a shallow estuary along the Texas Gulf Coast." Estuarine, Coastal and Shelf Science 76(1):69-84.  doi:10.1016/j.ecss.2007.06.010
  • Weldy CS, and MH Huesemann. 2007. "Lipid Production by Dunaliella salina in Batch Culture: Effects of Nitrogen Limitation and Light Intensity." Journal of Undergraduate Research VII:115-122. 
  • Whelan G, WD Millard, GM Gelston, TP Khangaonkar, MA Pelton, DL Strenge, Z Yang, C Lee, C Sivaraman, AJ Stephan, BL Hoopes, and KJ Castleton. 2007. "Using FRAMES to Manage Environmental and Water Resources." In Proceedings of the World Environmental and Water Resources Congress 2007: Restoring our Natural Habitat, May 15–19, 2007, Tampa, Florida, USA, ed. Karen C. Kabbes.  American Society of Civil Engineers, Reston, VA.  doi:10.1061/40927(243)130
  • Woodruff DL, NP Kohn, VI Cullinan, SS Southard, and J Vavrinec, III. 2007. Fourth Annual Report: 2007 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall MitigationPNNL-15678-4, Pacific Northwest National Laboratory, Richland, WA. 
  • Woodruff DL, SS Southard, VI Cullinan, NP Kohn, MG Anderson, and J Vavrinec, III. 2007. Third Annual Report: 2006 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall MitigationPNNL-15678-3, Pacific Northwest National Laboratory, Richland, WA. 

2006

  • Anderson JW, and RF Lee. 2006. "Use of Biomarkers in Oil Spill Risk Assessment in the marine environment." Human and Ecological Risk Assessment 12(6):1192-1222. 
  • Deng Z, MC Richmond, and TJ Carlson. 2006. Characterization of The Dalles Dam Spillbay 6 Vortex Using Surface Entrained Sensor Fish Device: Preliminary Report PNNL-15883, Pacific Northwest National Laboratory, Richland, WA. 
  • Diefenderfer HL, RM Thom, AB Borde, GC Roegner, AH Whiting, GE Johnson, E Dawley, JR Skalski, J Vavrinec, III, and BD Ebberts. 2006. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2005PNNL-15934, Pacific Northwest National Laboratory, Richland, WA. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of fall Chinook salmon embryos, alevin, and fry exposed to variable thermal and dissolved oxygen regimes." Transactions of the American Fisheries Society 135(6):1462-1477. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of Snake River fall Chinook salmon Embryos, Alevins, and Fry Exposed to Variable Thermal and Dissolved Oxygen Regimes." Transactions of the American Fisheries Society 135(6):1462-1477.  doi:10.1577/T05-294.1
  • Huesemann MH. 2006. "Can Advances in Science and Technology Prevent Global Warming? A Critical Review of Limitations and Challenges." Mitigation and Adaptation Strategies for Global Change 11:539-577. 
  • Johnson GE, and DD Dauble. 2006. "Surface Flow Outlets to Protect Juvenile Salmonids Passing through Hydropower Dams." Reviews in Fisheries Science 14(3):213-244. 
  • Johnson GE. 2006. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY06 Annual ReportPNNL-16142, Pacific Northwest National Laboratory, Richland, WA. 
  • Pearson WH, NP Kohn, and JR Skalski. 2006. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation ChannelPNNL-16139, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, MA Weiland, SA Zimmerman, JS Hughes, KE Bouchard, ES Fischer, CR Schilt, ME Hanks, J Kim, JR Skalski, J Hedgepeth, and WT Nagy. 2006. Hydroacoustic Evaluation of Fish Passage Through Bonneville Dam in 2005PNNL-15944, Pacific Northwest National Laboratory, Richland, WA. 
  • Schultz IR, and RE Shangraw. 2006. "Effect of Short-Term Drinking Water Exposure to Dichloroacetate on its Pharmacokinetics and Oral Bioavailability in Human Volunteers: A Stable Isotope Study." Toxicological Sciences 92(1):42-50. 
  • Cook CB, B Dibrani, JA Serkowski, MC Richmond, PS Titzler, and GW Dennis. 2006. Acoustic Doppler Current Profiler Measurements in the Tailrace at John Day DamPNNL-15627, Pacific Northwest National Laboratory, Richland, WA. 
  • Dellapenna TM, MA Allison, GA Gill, RD Lehman, and KW Warnken. 2006. "The impact of shrimp trawling and associated sediment resuspension in mud dominated, shallow estuaries." Estuarine, Coastal and Shelf Science 69(3-4):519-530.  doi:10.1016/j.ecss.2006.04.024
  • Ettesvold MR, MG Foley, CE Willingham, Jr, P Becker, LF Hibler, and MC Miller. 2006. Environmental Implications of the OSCAR II SSGN Kursk Submarine AccidentPNNL-13531, Pacific Northwest National Laboratory, Richland, WA. 
  • Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Dose-Response Relationships in Gene Expression Profiles in Rainbow Trout, Onorhyncus mykiss Exposed to Ethynylestradiol ." Marine Environmental Research 62(suppl.):S151-S155.  doi:10.1016/j.marenvres.2006.04.056
  • Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Gene expression patterns in Rainbow Trout, Oncorhynchus mykiss, exposed to a suite of model toxicants." Aquatic Toxicology 77(4):372-385.  doi:10.1016/j.aquatox.2006.01.007
  • Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Temporal Changes in Gene Expression in Rainbow Trout Exposed to Ethynyl Estradiol ." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145(1):73-85.  doi:doi:10.1016/j.cbpc.2006.10.011
  • Huesemann MH, TJ Fortman, RG Riley, CJ Thompson, Z Wang, MJ Truex, and BM Peyton. 2006. "Slow Desorption of Phenanthrene from Silica Particles: Influence of Pore Size, Pore Water, and Aging Time." In 20th Annual International Conference on Soils, Sediments, and Water: Successes and Challenges published in CONTAMINATED SOILS SEDIMENTS AND WATER, 2006, vol. 10, ed. Calabrase, E. J.; Kostecki, P. T.; Dragun, J., pp. 1-24.  Springer, New York, NY. 
  • Johnson GE, F Khan, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, JA Serkowski, and JR Skalski. 2006. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Sluiceway, 2005PNNL-15540, Pacific Northwest National Laboratory, Richland, WA. 
  • Khangaonkar TP, SA Breithaupt, and FC Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington – Feasibility Assessment ." In Estaurine and Coastal Modeling Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, ed. M.L. Spaulding, pp. 734-751.  American Society of Civil Engineers, Reston, VA. 
  • Khangaonkar TP, SA Breithaupt, and FC Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington – Feasibility Assessment." In 9th International Conference on Estuarine Coastal Modeling Conference, ed. ML Spaulding.  American Society of Civil Engineering, New York, NY. 
  • Kim J, WL Hayton, and IR Schultz. 2006. "Modeling the brain-pituitary-gonad axis in salmon." Marine Environmental Research 62(Supplement):S426-S432. 
  • Kohn NP, JM Brandenberger, LA Niewolny, and RK Johnston. 2006. Organics Verification Study for Sinclair and Dyes Inlets, WashingtonPNNL-16070, Pacific Northwest National Laboratory, Richland, WA. 
  • Lee C, Z Yang, TP Khangaonkar, and AB Divers. 2006. "Application of a Hydrodynamic Model for Assessing the Hydraulic Capacity and Flow Field at Willamette Falls Dam, Oregon." In Estuarine and Coastal Modeling. Proceedings of 9th International Conference held in Charleston, SC, Oct.31-Nov. 2, 2005, ed. M.L. Spaulding, pp. 788-805.  American Society of Civil Engineers, Reston, VA. 
  • Muirhead EK, AD Skillman, SE Hook, and IR Schultz. 2006. "Oral Exposure of PBDE-47 in Fish: Toxicokinetics and Reproductive Effects in Japanese Medaka (Oryzias latipes) and Fathead Minnows (Pimephales promelas)." Environmental Science and Technology 40(2):523-528. 
  • Nichols JW, IR Schultz, and PN Fitzsimmons. 2006. "In vitro-in vivo extrapolation of quantitative hepatic biotransformation data for fish - I. A review of methods, and strategies for incorporating intrinsic clearance estimates into chemical kinetic models." Aquatic Toxicology 78(1):74-90. 
  • Pearson WH, JR Skalski, KL Sobocinski, MC Miller, GE Johnson, GD Williams, JA Southard, and RA Buchanan. 2006. A Study of Stranding of Juvenile Salmon by Ship Wakes Along the Lower Columbia River Using a Before-and-After Design: Before-Phase ResultsPNNL-15400, Pacific Northwest National Laboratory, Richland, WA. 
  • Pearson WH, MC Miller, GD Williams, NP Kohn, and JR Skalski. 2006. Preliminary Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Materials from the Columbia RiverPNNL-15477, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, GE Johnson, MA Weiland, F Khan, RP Mueller, JA Serkowski, CL Rakowski, J Hedgepeth, JR Skalski, BD Ebberts, and BA Klatte. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams ." In HydroVision 2006, p. 13 pages.  HCI Publications, Kansas City, MO. 
  • Steinmaus KL, J Bowles, DL Woodruff, T Donato, WJ Rhea, WA Snyder, DR Korwan, LM Miller, GM Petrie, AR Maxwell, and LF Hibler. 2006. "Evolution of a Man-Made Plume in Coastal Waters." Eos 87(51):581-592. 
  • Whelan G, WD Millard, GM Gelston, MA Pelton, Z Yang, DL Strenge, C Lee, C Sivaraman, MJ Simpson, JK Young, TP Khangaonkar, TR Downing, BL Hoopes, and LE Hachmeister. 2006. Rapid Risk Assessment: FY05 Annual Summary ReportPNNL-15697, Pacific Northwest National Laboratory, Richland, WA. 
  • Yang Z, H Liu, and TP Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling: Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, ed. M.L. Spaulding, pp. 752-767.  American Society of Civil Engineers, Reston, VA. 

2005

  • Anderson JW, SI Hartwell, and MJ Hameedi. 2005. "Regional Comparisons of Coastal Sediment Contamination Detected by a Biomarker (P450 HRGS; EPA Method 4425)." Environmental Science and Technology 39(1):17-23. 
  • Carlson TJ, and CS Abernethy. 2005. Pilot Study of the Effects of Simulated Turbine Passage Pressure on Juvenile Chinook Salmon Acclimated with Access to Air at Absolute Pressures Greater than Atmospheric PNNL-15011, Pacific Northwest National Laboratory, Richland, WA. 
  • Carlson TJ, JP Duncan, and RL Johnson. 2005. Characterization of Pump Flow at the Grand Coulee Pumping Station for Fish Passage, 2004PNNL-14998, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, MC Richmond, RP Mueller, JP Duncan, and TJ Carlson. 2005. "Laboratory study of biological response of juvenile salmon subjected to turbulent shear flows." In Proceedings of Waterpower XIV, Advancing Technology for Sustainable Energy, Austin, Texas, July 18-22, 2005, p. 15 pp.  HCI Publications, Kansas City, MO. 
  • Diefenderfer HL, C Roegner, RM Thom, EM Dawley, AH Whiting, GE Johnson, KL Sobocinski, MG Anderson, and B Ebberts. 2005. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2004PNNL-15102, Pacific Northwest National Laboratory, Richland, WA. 
  • Diefenderfer HL, RM Thom, and K Hofseth. 2005. "A Framework for Risk Analysis for Ecological Restoration Projects in the U.S. Army Corps of Engineers ." Chapter 4 in Economics and Ecological Risk Assessment: Applications to Watershed Management, Environmental and Ecological Risk Assessment Series, vol. 5, ed. Randall J. F. Bruins, Matthew T. Heberling, pp. 57-105.  CRC Press, Boca Raton, FL. 
  • Evans NR, DL Woodruff, and VL Trainer. 2005. "Development of coastal upwelling edge detection algorithms associated with harmful algal blooms off the Washington coast using sea surface temperature imagery." In Remote sensing of the coastal oceanic environment: 31 July-1 August, 2005, San Diego, California, USA ; Proceedings of SPIE--the International Society for Optical Engineering, vol. 5885, ed. R.J. Frouin, M. Babin, Shubha Sathyendranath, p. 58850L.  International Society for Optical Engineering, Bellingham, WA. 
  • Geist DR, RS Brown, VI Cullinan, SR Brink, KB Lepla, P Bates, and JA Chandler. 2005. "Movement, swimming speed, and oxygen consumption of juvenile white sturgeon in response to changing flows, water temperatures, and light level in the Snake River, Idaho." Transactions of the American Fisheries Society 134(4):803-816. 
  • Johnson GE, SM Anglea, NS Adams, and TO Wik. 2005. "Evaluation of a prototype surface flow bypass for juvenile salmon and steelhead at the powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." Fisheries 25(1):138-151. 
  • Johnson GE, SM Anglea, NS Adams, and TO Wik. 2005. "Evaluation of a Prototype Surface Flow Bypass for Juvenile Salmon and Steelhead at the Powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." North American Journal of Fisheries Management 25(1):138-151.  doi:10.1577/M04-024.1
  • May CW, and VI Cullinan. 2005. An Analysis of Microbial Pollution in the Sinclair-Dyes Inlet WatershedPNNL-15373, Pacific Northwest National Laboratory, Richland, WA. 
  • Ploskey GR, GE Johnson, AE Giorgi, RL Johnson, JR Stevenson, CR Schilt, PN Johnson, and DS Patterson. 2005. Synthesis of Biological Reports on Juvenile Fish Passage and Survival at Bonneville Dam through 2005 PNNL-15041, Pacific Northwest National Laboratory, Richland, WA. 
  • Rakowski CL, MC Richmond, JA Serkowski, and GE Johnson. 2005. Forebay Computational Fluid Dynamics Modeling for The Dalles Dam to Support Behavior Guidance System Siting StudiesPNNL-15689, Pacific Northwest National Laboratory, Richland, WA. 
  • Williams GD, NP Kohn, WH Pearson, and JR Skalski. 2005. Impacts to Dungeness Crab from the Southwest Washington Littoral Drift Restoration ProjectPNNL-15385, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, TJ Carlson, GR Ploskey, and MC Richmond. 2005. Evaluation of Blade-Strike Models for Estimating the Biological Performance of Large Kaplan Hydro TurbinesPNNL-15370, Pacific Northwest National Laboratory, Richland, WA. 
  • Evans NR, GD Williams, RM Thom, and AB Borde. 2005. "Prioritizing Restoration Sites in the Columbia River Estuary." In Proceedings of the 25th Annual ESRI International User Conference, July 25-29, 2005, San Diego, California.  ESRI International, Redlands, CA. 
  • Faber DM, ME Hanks, SA Zimmerman, JR Skalski, and PW Dillingham. 2005. The Distribution and Flux of Fish in the Forebay of The Dalles Dam in 2003 PNNL-14628, Pacific Northwest National Laboratory, Richland, WA. 
  • Gray JE, and BK Lasorsa. 2005. "MERCURY SPECIATION IN SOIL SAMPLES FROM THE MARISCAL MERCURY MINE, BIG BEND NATIONAL PARK, TEXAS." Geological Society of America Bulletin 37(7):439. 
  • Gray JE, DL Fey, CW Holmes, and BK Lasorsa. 2005. "Historical deposition and fluxes of mercury in Narraguinnep Reservoir, southwestern Colorado,USA." Applied Geochemistry 20(1):207-220. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2005. "Leaching of BTEX from Aged Crude Oil Contaminated Model Soils: Experimental and Modeling Results ." Soil & Sediment Contamination 14:545-558. 
  • Johnson GE, ME Hanks, F Khan, CB Cook, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, SL Sargeant, JA Serkowski, and JR Skalski. 2005. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam in 2004PNNL-15180, Pacific Northwest National Laboratory, Richland, WA. 
  • Khangaonkar TP, Z Yang, C DeGasperi, and K Marshall. 2005. "Modeling Hydrothermal Response of a Reservoir to Modifications at a High-Head Dam." Water International 30(3):378-388. 
  • Lee RF, and JW Anderson. 2005. "Significance of Cytochrome P450 System Responses and Levels of Bile Fluorescent Aromatic Compounds in Marine Wildlife Following Oil Spills." Marine Pollution Bulletin 50(7):705-723. 
  • Pearson WH, GD Williams, and JR Skalski. 2005. Dungeness Crab Dredging Entrainment Studies in the Lower Columbia River, 2002 – 2004: Loss Projections, Salinity Model, and Scenario Analysis PNNL-15021, Pacific Northwest National Laboratory, Richland, WA. 
  • Rice CA, WG Hood, LM Tear, C Simenstad, GD Williams, LL Johnson, BE Feist, and P Roni. 2005. "Monitoring Rehabilitation in Temperate North American Estuaries." Chapter 7 in Monitoring Stream and Watershed Restoration, ed. Philip Roni, Ed Quimby, pp. 167-208.  American Fisheries Society, Bethesda, MD. 
  • Saghir SA, and IR Schultz. 2005. "Toxicokinetics and Oral Bioavailability of Halogenated Acetic Acids Mixtures in Naive and GSTzeta-Depleted Rats." Toxicological Sciences 84(2):214-224. 
  • Thom RM, GD Williams, AB Borde, JA Southard, SL Sargeant, DL Woodruff, JC Laufle, and S Glasoe. 2005. "Adaptively Addressing Uncertainty in Estuarine and Near Coastal Restoration Projects." Journal of Coastal Research. JCR 40(sp. iss.):94-108. 
  • Thom RM, GD Williams, and HL Diefenderfer. 2005. "Balancing the Need to Develop Coastal Areas with the Desire for an Ecologically Functioning Coastal Environment: Is Net Ecosystem Improvement Possible?" Restoration Ecology 13(1):193-203.  doi:10.1111/j.1526-100X.2005.00024.x
  • Weiland MA, RP Mueller, TJ Carlson, Z Deng, and CA McKinstry. 2005. Characterization of Bead Trajectories Through the Draft Tube of a Turbine Physical Model. PNNL-14879, Pacific Northwest National Laboratory, Richland, WA. 
  • Wunschel DS, IR Schultz, AD Skillman, and KL Wahl. 2005. "Method for Detection and Quantitation of Fathead Minnow Vitellogenin (Vtg) by Liquid Chromatography and Matrix Assisted Laser Desorption/ Ionization Mass Spectrometry ." Aquatic Toxicology 73:256-267. 
  • Yang Z, H Liu, and TP Khangaonkar. 2005. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In The 9th International Conference on Estuarine and Coastal Modeling.  American Society of Civil Engineers, Reston, VA. 

2004

  • Carlson TJ, JP Duncan, TL Gilbride, and G Keilman. 2004. "The Sensor Fish - Making Dams More Salmon-Friendly." Sensors Magazine 21(7):31-34. 
  • Deng Z, MC Richmond, CS Simmons, and TJ Carlson. 2004. Six-Degree-of-Freedom Sensor Fish Design: Governing Equations and Motion ModelingPNNL-14779, Pacific Northwest National Laboratory, Richland, WA. 
  • Diefenderfer HL, SL Sargeant, RM Thom, AB Borde, PF Gayaldo, CA Curtis, BL Court, DM Pierce, and DS Robison. 2004. "Demonstration Dock Designed to Benefit Eelgrass Habitat Restoration (Washington)." Ecological Restoration 22(2):140-141. 
  • Evans NR, DL Woodruff, and VL Trainer. 2004. "Using Remotely-Sensed Sea-Surface Temperature Data to Track Movement of the Juan de Fuca Eddy in Association with Pacific Northwest Coast Harmful Algal Blooms." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, ed. T Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Guensch GR, MC Richmond, H Tritico, and WH Pearson. 2004. "Characterization of Turbulent Open Channel Flow in a Full-Scale Spiral Corrugated Culvert." In Critical Transitions In Water And Environmental Resources Management: Proceedings of the World Water and Environmental Resources Congress, ed. G Sehlke, DF Hayes and DK Stevens.  American Society of Civil Engineers, Reston, VA.  doi:10.1061/40737(2004)183
  • Huesemann MH. 2004. "Biodegradation and Bioremediation of Petroleum Pollutants in Soil." Chapter 2 in Applied Bioremediation and Phytoremediation , vol. 1, Soil Biology Series, ed. A. Singh, O.P. Ward, pp. 13-34.  Springer Verlag, Berlin Heidelberg, Germany. 
  • Huesemann MH. 2004. "The Failure of Eco-Efficiency to Guarantee Sustainability: Future Challenges for Industrial Ecology." Environmental Progress 23(4):264-270. 
  • Johnson GE, J Hedgepeth, JR Skalski, and AE Giorgi. 2004. "A Markov Chain Analysis of Fish Movements to Determine Entrainment Zones ." Fisheries Research 69(3):349-358. 
  • Johnson GE, J Hedgepeth, JR Skalski, and AE Giorgi. 2004. "A Markov chain analysis of fish movements to determine entrainment zones." Fisheries Research 69(3):349-358. 
  • Kropp RK. 2004. Review of Deep-Sea Ecology and Monitoring as They Relate to Deep-Sea Oil and Gas OperationsPNNL-14540, Pacific Northwest National Laboratory, Richland, WA. 
  • May CW, MC Miller, and JA Southard. 2004. An Analysis of Stream Culvert Fish Passage on the Navy Railroad Line between Bremerton and Shelton, WashingtonPNNL-14530, Pacific Northwest National Laboratory, Richland, WA. 
  • Williams GD, RM Thom, JA Southard, SL Sargeant, DK Shreffler, and MT Stamey. 2004. "Assessing Overwater Structure-Related Predation on Juvenile Salmon: A Field Study and Protocol for Weighing the Evidence." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Mary 31- April 3, 2003, Vancouver, BC (Canada), ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Williams GD, RM Thom, NR Evans, AB Borde, and PN Best. 2004. "Bainbridge Island Nearshore Habitat Characterization and Assessment." In 2003 Georgia Basin/Puget Sound Research Conference, March 31 - April 3, 2003, Vancouver, BC (Canada), ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Carlson TJ, and GR Ploskey. 2004. Comparison of Blade-Strike Modeling Results with Empirical DataPNNL-14603, Pacific Northwest National Laboratory, Richland, WA. 
  • Gray JE, ME Hines, PL Higueras, I Adatto, and BK Lasorsa. 2004. "Mercury Speciation and Microbial Transformations in Mine Wastes, Stream Sediments, and Surface Waters at the Almaden Mining District, Spain." Environmental Science & Technology 38(16):4285-4292.  doi:10.1021/es040359d
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2004. "Does Bioavailability Limit Biodegradability? A Comparison of Hydrocarbon Biodegradation and Desorption Rates in Aged Soils." Biodegradation 15(4):261-274. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2004. "Reduction of Toxicity and PAH Bioaccumulation Potential During Bioremediation of Petroleum Contaminated Soils." In The Seventh International In Situ and On-Site Bioremediation Symposium, ed. V Magar and ME Kelley, pp. Paper No. J-05.  Battelle Press, Columbus, OH. 
  • Huesemann MH, TS Hausmann, TJ Fortman, RM Thom, and EA Foote. 2004. "Using Eelgrass (Zostera marina) for Phytoremediation of PAH-Contaminated Marine Sediments ." In The Seventh International In Situ and On-Site Bioremediation Symposium, ed. VS Magar and ME Kelley, pp. Paper No. N-14.  Battelle Press, Columbus, OH. 
  • Keys DA, IR Schultz, DA Mahle, and JW Fisher. 2004. "A Quantitative Description of Suicide Inhibition of Dichloroacetic Acid in Rats and Mice." Toxicological Sciences 82(2):381-393. 
  • Kohn NP, MC Miller, JM Brandenberger, and RK Johnston. 2004. Metals Verficiation Study for Sinclair and Dyes Inlets,Washington PNNL-14872, Pacific Northwest National Laboratory, Richland, WA. 
  • Kohn NP, and NR Evans. 2004. Year 6 Post-Remediation Biomonitoring and Phase II Source Investigation at the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-14596, Pacific Northwest National Laboratory, Richland, WA. 
  • Malins DC, JJ Stegeman, JW Anderson, PM Johnson, J Gold, and KM Anderson. 2004. "Structural Changes in Gill DNA Reveal the Effects of Contaminants on Puget Sound Fish." Environmental Health Perspectives 112(5):511-515. 
  • Moursund RA, and TJ Carlson. 2004. Turbine Imaging Technology AssessmentPNNL-14759, Pacific Northwest National Laboratory, Richland, WA. 
  • Neff JM, PD Boehm, RK Kropp, WA Stubblefield, and DS Page. 2004. "Monitoring Recovery of Prince William Sound, Alaska, Following the Exxon Valdez Oil Spill: Bioavailability of PAH in Offshore Sediments." In 2005 International Oil Spill Conference prevention, preparedness, response, and restoration: May 15-19, 2005, Miami Beach Convention Center, Miami Beach, Florida, pp. 9562-9568.  American Petroleum Institute, Washington, DC. 
  • Thom RM, GD Williams, and AB Borde. 2004. "Conceptual Models as a Tool for Assessing, Restoring, and Managing Puget Sound Habitats and Resources ." In 2003 Georgia Basin/Puget Sound Resarch Conference Proceedings, March 31-April 3, 2003, Vancouver, BC (Canada), ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Williams GD, WH Pearson, NR Evans, and MG Anderson. 2004. Benson Beach Demonstration Project: Composition and Abundance of Biota at Three Alternative Sump SitesPNNL-14522, Pacific Northwest National Laboratory, Richland, WA. 
  • Woodruff DL, AB Borde, R Garono, C Simenstad, and J Norris. 2004. "Nearshore Habitat Mapping In Hood Canal Using Underwater Video and Hyperspectral Imaging." In 2003 Georgia Basin/Puget Sound Research Conference, March 31 - April 3, 2003, Vancouver, BC , ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 

2003

  • Anderson JW, JM Jones, DL McCoy, A Fujita, T Yamamoto, and S Iijima. 2003. "Comparison Between a Rapid Biological Screening Method (EPA 4425) for TCDDs/TCDFs and Chemical Analytical Methods." Chapter Organohalogen Compounds in Proceedings to Dioxin 2003: The 23rd International Symposium on Halogenated Environmental Organic Pollutants and Persistent Organic Pollutants published in Organohalogen Compounds Vol. 60 , vol. 60, pp. 271-274.  Eco Informa Press, Bayreuth, Germany. 
  • Borde AB, RM Thom, S Rumrill, and LM Miller. 2003. "Geospatial Habitat Analysis in Pacific Northwest Coastal Estuaries." Estuaries 26(4B):1104-1116. 
  • Carlson TJ, and JP Duncan. 2003. Evolution of the Sensor Fish Device for Measuring Physical Conditions in Severe Hydraulic EnvironmentsPNNL-15708, Pacific Northwest National Laboratory, Richland, WA. 
  • Carlson TJ, JP Duncan, and TL Gilbride. 2003. "The Sensor Fish: Measuring Fish Passage in Severe Hydraulic Conditions." Hydro Review 22(3):62-69. 
  • Diefenderfer HL, SL Sargeant, RM Thom, AB Borde, PF Gayaldo, CA Curtis, BL Court, DM Pierce, and DS Robison. 2003. "Dock Design to Facilitate the Restoration of Eelgrass in Port Townsend Bay, Washington." In Assembling the Pieces - Restoration, Design and Landscape Ecology: Proceedings of the Annual Conference of the Society for Ecological Restoration International, November 19-22, 2003, Austin, Texas.  Society for Ecological Restoration International, Tucson, AZ. 
  • Faber DM, MA Weiland, TJ Carlson, K Cash, and SA Zimmerman. 2003. The Feasibility of Using an Ultrasonic Fish Tracking System in the Tailrace of Lower Granite Dam in 2002PNNL-14340, Pacific Northwest National Laboratory, Richland, WA. 
  • Huesemann MH. 2003. "Recognizing the Limits of Environmental Science and Technology." Environmental Science and Technology 37(13):259A-261A. 
  • Huesemann MH. 2003. "The Limits of Technological Solutions to Sustainable Development ." Clean Technologies and Environmental Policy 5:21-34. 
  • Johnson GE, BD Ebberts, DD Dauble, AE Giorgi, PG Heisey, RP Mueller, and DA Neitzel. 2003. "Effects of Jet Entry at High-Flow Outfalls on Juvenile Pacific Salmon." North American Journal of Fisheries Management 23(2):441-449. 
  • Schultz IR, AD Skillman, JM Nicolas, DG Cyr, and JJ Nagler. 2003. "Short-term exposure to 17alpha-ethynylestradiol decreases the fertility of sexually maturing male rainbow trout (Oncorhynchus mykiss)." Environmental Toxicology and Chemistry 22(6):1272-1280. 
  • Allen-Gil SM, J Ford, BK Lasorsa, M Monetti, T Vlasova, and DH Landers. 2003. "Heavy Metal Contamination in the Taimyr Peninsula, Siberian Arctic." Science of the Total Environment 301:119-138. 
  • Crecelius EA, RK Johnston, J Leather, J Guerrero, MC Miller, and JM Brandenberger. 2003. "Contaminant Mass Balance for Sinclair and Dyes Inlets, Puget Sound, WA." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Geist DR, RS Brown, VI Cullinan, MG Mesa, SP VanderKooi, and CA McKinstry. 2003. "Relationships Between Metabolic Rate, Muscle Electromyograms and Swim Performance of Adult Chinook Salmon." Journal of Fish Biology 63(4):970-989. 
  • Geist DR, RS Brown, VI Cullinan, MG Mesa, SP VanderKooi, and CA McKinstry. 2003. "Relationships between metabolic rate, muscle electromyograms, and swim performance of adult chinook salmon." Journal of Fish Biology 63(4):970-989. 
  • Gray JE, ME Hines, H Biester, and BK Lasorsa. 2003. "Mercury Methylation in Mine Wastes Collected from Abandoned Mercury Mines in the USA." Journal de physique IV 107:573-576. 
  • Holt AC, RP Stumpf, MC Tomlinson, V Ransibrahmanakul, VL Trainer, and DL Woodruff. 2003. "Applications of Satellite Ocean Color Imagery for Detecting and Monitoring Harmful Algal Blooms in the Olympic Peninsula Region." In Coastal Zone 03: Proceedings of the 13th Biennial Coastal Zone Conference, Baltimore MD, July 13-17, 2003., no. NOAA/CSC/20322-CD, NOAA Coastal Services Center, Charleston, SC. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2003. "Assessment of Bioavailability Limitations During Slurry Biodegradation of Petroleum Hydrocarbons in Aged Soils." Environmental Toxicology and Chemistry 22(12):2853-2860. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2003. "Biodegradation of Hopane Prevents Use As Conservative Biomarker During Bioremediation of PAHs in Petroleum Contaminated Soils." Bioremediation Journal 7(2):111-117. 
  • Johnson GE, RM Thom, AH Whiting, GB Sutherland, TJ Berquam, B Ebberts, NM Ricci, JA Southard, and JD Wilcox. 2003. An Ecosystem-Based Restoration Plan with Emphasis on Salmonid Habitats in the Lower Columbia River and EstuaryPNNL-14412, Pacific Northwest National Laboratory, Richland, WA. 
  • Moursund RA, TJ Carlson, and RD Peters. 2003. "A Fisheries Application of a Dual-Frequency Identification Sonar Acoustic Camera." ICES Journal of Marine Science 60(3):678-683. 
  • Paulay G, RK Kropp, PK Ng, and LG Eldredge. 2003. "The crustaceans and pycnogonids of the Mariana Islands." Micronesica 35-36:456-517. 
  • Pearson WH, GD Williams, and JR Skalski. 2003. Estimated Entrainment of Dungeness Crab During Maintenance Dredging of the Mouth of the Columbia River, Summer 2002PNNL-14190, Pacific Northwest National Laboratory, Richland, WA. 
  • Powell DB, RC Palm, AD Skillman, and K Godtfredsen. 2003. "Immunocompetence of Juvenile Chinook Salmon Against Listonella anguillarum Following Dietary Exposure to Aroclor (R) 1254." Environmental Toxicology and Chemistry 22(2):285-295. 
  • Sargeant SL, RM Thom, HL Diefenderfer, AB Borde, and JA Southard. 2003. "Evaluation of Methods to Increase Light under Large Overwater Structures." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Southard JA, GD Williams, SL Sargeant, HL Diefenderfer, and ML Blanton. 2003. "Using Advanced Scientific Diving Technologies to Assess the Underwater Environment." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, ed. TW Droscher and DA Fraser.  Puget Sound Action Team, Olympia, WA. 
  • Thom RM, AB Borde, S Rumrill, DL Woodruff, GD Williams, JA Southard, and SL Sargeant. 2003. "Factors Influencing Spatial and Annual Variability in Eelgrass (Zostera marina L.) Meadows in Willapa Bay, Washington, and Coos Bay, Oregon, Estuaries." Estuaries 26(4B):1117-1129. 
  • West JM, GD Williams, SP Madon, and JB Zedler. 2003. "Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary." Environmental Biology of Fishes 67:297-309. 

2002

  • Huesemann MH. 2002. "The Inherent Biases in Environmental Research and Their Effects on Public Policy." Futures 34(7):621-633. 
  • Pearson WH, MC Richmond, and J Schafer. 2002. "Culvert Testing Program for Juvenile Salmonid Passage." In Proceedings of the International Conference on Ecology and Transportation, Keystone, CO, September 24-28, 2001. , pp. 92-97.  NC State University, Center for Transportation and the Environment, Raleigh, NC. 
  • Schultz IR, JL Merdink, A Gonzalez-Leon, and RJ Bull. 2002. "Dichloroacetate toxicokinetics and disruption of tyrosine catabolism in B6C3F1 mice: dose-response relationships and age as a modifying factor ." Toxicology (173):229-247. 
  • Blanton SL, RM Thom, AB Borde, HL Diefenderfer, and JA Southard. 2002. Evaluation of Methods to Increase Light Under Ferry TerminalsPNNL-13714, Pacific Northwest National Laboratory, Richland, WA. 
  • Gray JE, JG Crock, and BK Lasorsa. 2002. "Mercury Methylation at Mercury Mines In The Humboldt River Basin, Nevada, USA." Geochemistry. Exploration, Environment, and Analysis 2(2):143-149. 
  • Hedgepeth J, GE Johnson, JR Skalski, and J Burczynski. 2002. "Active Fish Tracking Sonar (AFTS) for Assessing Fish Behaviour." In European Conference on Underwater Acoustics, published in "Acta Acustica United with Acustica", vol. 88, no. 5, pp. 739-742.  S. Hirzel Verlag, Stuttgart, Germany. 
  • Huesemann MH, AD Skillman, and EA Crecelius. 2002. "The Inhibition of Marine Nitrification by Ocean Disposal of Carbon Dioxide." Marine Pollution Bulletin 44(2):142-148. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2002. "Microbial Factors Rather Than Bioavailability Limit the Rate and Extent of PAH Biodegradation in Aged Crude Oil Contaminated Model Soils." Bioremediation Journal 6(4):321-336. 
  • Johnson RL, MA Simmons, CS Simmons, and SL Blanton. 2002. "A New Multibeam Sonar Technique for Evaluating Fine-Scale Fish Behavior Near Hydroelectric Dam Guidance Structures." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 2001, vol. 26, no. 2001, ed. Coutant, C., pp. 161-170.  Amer. Fisheries Society, Bethesda, MD. 
  • Kohn NP, and NR Evans. 2002. Phase I Source Investigation, Heckathorn Superfund Site, Richmond, CaliforniaPNNL-14088, Pacific Northwest National Laboratory, Richland, WA. 
  • Kohn NP, and RK Kropp. 2002. Year 5 Post-Remediation Biomonitoring of Pesticides and other Contaminants in Marine Waters near the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-13990, Pacific Northwest National Laboratory, Richland, WA. 
  • Miller MC, GD Williams, LK O'Rourke, JA Southard, and SL Blanton. 2002. Effects of Shoreline Hardening and Shoreline Protection Features on Fish Utilization and Behavior at Washaway Beach, Washington (Report 2)PNNL-13635-(2), Pacific Northwest National Laboratory, Richland, WA. 
  • Pearson WH, GD Williams, and JR Skalski. 2002. Estimated Entrainment of Dungeness Crab During Dredging For The Columbia River Channel Improvement ProjectPNNL-14129, Pacific Northwest National Laboratory, Richland, WA. 
  • Saghir SA, and IR Schultz. 2002. "Low-Dose Pharmacokinetics and Oral Bioavailability of Dichloroacetate in Naive and GST-zeta Depleted Rats." Environmental Health Perspectives 110(8):757-763. 
  • Steimle F, KL Foster, RK Kropp, and B Conlin. 2002. "Benthic macrofauna productivity enhancement by an artificial reef in Delaware Bay, USA." ICES Journal of Marine Science 59:S100-S105 Suppl. S OCT 2002. 
  • Thom RM, AB Borde, GD Williams, JA Southard, and SL Blanton. 2002. "Adaptive Management to Improve Seagrass Restoration Success." In Watershed 2002: Proceedings of the Water Environment Federation, February 23-27, 2002, Fort Lauderdale, Florida, pp. 362-373.  Water Environment Federation, Alexandria, VA. 
  • Thom RM, R Zeigler, and AB Borde. 2002. "Floristic Development Patterns in a Restored Elk River Estuarine Marsh, Grays Harbor, Washington." Restoration Ecology 10(3):487-496. 
  • Thom RM, SL Blanton, AB Borde, GD Williams, DL Woodruff, and MH Huesemann. 2002. "Investigations into Wetland Carbon Sequestration as Remediation for Global Warming ." In International Conference on Wetlands and Remediation; Wetlands and Remediation II, ed. KW Nehring and SE Brauning, pp. 311-320.  Battelle Press, Columbus, OH. 

2001

  • Carlson TJ, and MA Weiland. 2001. Light-Emitting Tag Testing in Conjunction with Testing of the Minimum Gap Runner Turbine Design at Bonneville Dam Powerhouse 1PNNL-13415, Pacific Northwest National Laboratory, Richland, WA. 
  • Faber DM, MA Weiland, R Moursund, TJ Carlson, N Adams, and D Rhondorf. 2001. Evaluation of the Fish Passage Effectiveness of the Bonneville I Prototype Surface Collector using Three-Dimensional Ultrasonic Fish TrackingPNNL-13526, Pacific Northwest National Laboratory, Richland, WA. 
  • Huesemann MH. 2001. "Can Pollution Problems Be Effectively Solved by Environmental Science and Technology? An Analysis of Critical Limitations." Ecological Economics 37(2):271-287. 
  • Kohn NP, and R Kropp. 2001. Year 4 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-13632, Pacific Northwest National Laboratory, Richland, WA. 
  • Kohn NP, and TJ Gilmore. 2001. Field Investigation to Determine the Extent of Sediment Recontamination at the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-13730, Pacific Northwest National Laboratory, Richland, WA. 
  • Schultz IR, and SR Sylvester. 2001. "Stereospecific Toxicokinetics of Bromochloro- and chlorofluoroacetate: Effect of GST-zeta Depletion." Toxicology and Applied Pharmacology 175(2):104-113. 
  • Schultz IR, GA Orner, JL Merdink, and AD Skillman. 2001. "Dose-response relationships and pharmacokinetics of vitellogenin in rainbow trout after intravascular administration of 17 alpha-ethynylestradiol ." Aquatic Toxicology 51(3):305-318. 
  • Williams GD, NR Evans, WH Pearson, and JA Southard. 2001. Assessing Juvenile Salmonid Passage Through Culverts: Field Research in Support of Protocol DevelopmentPNNL-13708, Pacific Northwest National Laboratory, Richland, WA. 
  • Adams N, GE Johnson, DW Rondorf, SM Anglea, and TO Wik. 2001. "Biological Evaluation of the Behavioral Guidance Structure at Lower Granite Dam on the Snake River, Washington in 1998." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, vol. 26, pp. 145-160.  American Fisheries Society, Bethesda, MD. 
  • Carlson TJ, GR Ploskey, RL Johnson, RP Mueller, MA Weiland, and PN Johnson. 2001. Observations of the Behavior and Distribution of Fish in Relation to the Columbia River Navigation Channel and Channel Maintenance ActivitiesPNNL-13595, Pacific Northwest National Laboratory, Richland, WA. 
  • Clements W, SN Luoma, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Stressor Interactions in Ecological Systems ." Chapter 7 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 215-233.  SETAC Press, Pensacola, FL. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2001. "Assessment of mass-transfer limitations during slurry bioremediation of PAHs and alkanes in aged soils." In Bioremediation Of Energetics, Phenolics, And Polycyclic Aromatic Hydrocarbons: the Sixth International In Situ and On-Site Bioremediation Symposium, San Diego, California, June 4-7, 2001, vol. 3, pp. 157-163.  Battelle Press, Columbus, OH. 
  • Johnson GE, and TJ Carlson. 2001. Monitoring and Evaluation of the Prototype Surface Collector at Bonneville First Powerhouse in 2000: Synthesis of ResultsPNNL-13516, Pacific Northwest National Laboratory, Richland, WA. 
  • Kohn NP, and RK Kropp. 2001. Year 3 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-13286, Pacific Northwest National Laboratory, Richland, WA. 
  • Long WL, and RM Thom. 2001. "Part III. Seagrass Habitat Conservation. Chapter 21. Improving seagrass habitat quality ." In Global Seagrass Research Methods , pp. 407-445.  Elsevier, Amsterdam, Netherlands. 
  • Luoma SN, W Clements, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Separating stressor influences from environmental variability: eight case studies from aquatic and terrestrial ecosystems." Chapter 6 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 179-215.  SETAC Press, Pensacola, FL. 
  • Luoma SN, W Clements, T Dewitt, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Role of Environmental Variability in Evaluating Stressor Effects." Chapter 5 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 141-179.  SETAC Press, Pensacola, FL. 
  • Madon SP, GD Williams, JM West, and JB Zedler. 2001. "The importance of marsh access to growth of the California killifish, Fundulus parvipinnis, evaluated through bioenergetics modeling." Ecological Modelling 136(2-3):149-165. 
  • Merdink JL, RJ Bull, and IR Schultz. 2001. "Toxicokinetics of Bromodichloroacetate in B6C3F1 mice." Journal of Applied Toxicology 21(1):53-57. 
  • Paluszkiewicz T, LF Hibler, MC Richmond, DJ Bradley, and SA Thomas. 2001. "Modeling the Potential Radionuclide Transport by the Ob and Yenisey Rivers to the Kara Sea." Marine Pollution Bulletin 43(1-6):111-121. 
  • Riley RG, CJ Thompson, MH Huesemann, Z Wang, BM Peyton, TJ Fortman, MJ Truex, and KE Parker. 2001. "Artificial Aging of Phenanthrene in Porous Silicas Using Supercritical Carbon Dioxide." Environmental Science and Technology 35(18):3707-3712. 
  • Thom RM, AB Borde, KO Richter, and LF Hibler. 2001. "Influence of Urbanization on Ecological Processes in Wetlands ." In Land Use and Watersheds : Human Influence on Hydrology and Geomorphology in Urban and Forest Areas. Water Science and Application, vol. 2, ed. Mark Wigmosta and Stephen Burges, pp. 5-16.  American Geophysical Union, Washington, DC. 
  • Thom RM, AB Borde, GD Williams, JA Southard, SL Blanton, and DL Woodruff. 2001. "Effects of Multiple Stressors on Eelgrass Restoration Projects." In Proceedings of Puget Sound Research 2001, the fifth Puget Sound Research Conference, vol. 1, ed. Droscher, Toni.  Puget Sound Water Quality Action Team, Olympia, WA. 
  • Thom RM, AB Borde, SL Blanton, DL Woodruff, and GD Williams. 2001. "The Influence of Climate Variation and Change on Structure and Processes in Nearshore Vegetated Communities of Puget Sound and other Northwest Estuaries." In Proceedings of the 2001 Puget Sound Research Conference.  Puget Sound Water Quality Action Team, Olympia, WA. 
  • Wang Z, D Friedrich, MR Beversluis, SL Hemmer, AG Joly, MH Huesemann, MJ Truex, RG Riley, CJ Thompson, and BM Peyton. 2001. "A Fluorescence Spectroscopic Study of Phenanthrene Sorbed on Porous Silica." Environmental Science and Technology 35(13):2710-2716. 

2000

  • Geist DR, CS Abernethy, SL Blanton, and VI Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129(1):126-135. 
  • Huesemann MH. 2000. "Why Most Remediation Technologies are Inherently Incapable of Solving Environmental Problems." In Risk, Regulatory, and Monitoring Considerations: Remediation of Chlorinated and Recalcitrant Compounds. International Conference on Remediation of Chlorinated and Recalcitrant Copounds, Monterey, California, May 22-25, 2000, vol. 1, ed. GB Wickramanayake, AR Gavaskar, ME Kelley, KW Nehring, pp. 271-277.  Battelle Press, Columbus, OH. 
  • Johnson GE, NS Adams, RL Johnson, DW Rondorf, DD Dauble, and TY Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129(2):381-397. 
  • Thom RM. 2000. "Adaptive management of coastal ecosystem restoration projects." Ecological Engineering 15(3-4):365-372. 
  • Antrim LD, and NP Kohn. 2000. Post-Remediation Biomonitoring of Pesticides in Marine Waters Near the United Heckathorn Site, Richmond, CaliforniaPNNL-11911-Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Antrim LD, and NP Kohn. 2000. Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters and Sediment Near the United Heckathorn Superfund Site, Richmond, CaliforniaPNNL-13059, Pacific Northwest National Laboratory, Richland, WA. 
  • Antrim LD, and NP Kohn. 2000. POST-REMEDIATION BIOMONITORING OF PESTICIDES AND OTHER CONTAMINANTS IN MARINE WATERS AND SEDIMENT NEAR THE UNITED HECKATHORN SUPERFUND SITE, RICHMOND, CALIFORNIAPNNL-13059-Rev 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Barron MG, IR Schultz, and ME Newman. 2000. "Pharmacokinetics of Intravascularly Administered (65)Zinc in Channel Catfish (Ictalurus punctatus) ." Ecotoxicology and Environmental Safety 45(3):304-309. 
  • Emmett R, R Llanso, J Newton, RM Thom, M Hornberger, C Morgan, C Levings, A Copping, and P Fishman. 2000. "Geographic Signatures of North American West Coast Estuaries." Estuaries 23(6):765-792. 
  • Huesemann MH, TS Hausmann, and TJ Fortman. 2000. "Comparison of PAH Biodegradation and Desorption Kinetics During Bioremediation of Aged Petroleum Hydrocarbon Contaminated Soils." In Case Studies in the remediation of Chlorinated and Recalcitrant Compounds; Second International Conference on Remediation of Chlorinated and Recalcitrant Copounds, Monterey, California, May 22-25, 2000, vol. 7, ed. GB Wickramanayake, AR Gavaskar, JT Gibbs, JL Means, pp. 181-188.  Battelle Press, Columbia, OH. 
  • Johnson RL, and GE Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, ed. Mufeed Odeh, pp. 57-67.  American Fisheries Society, Bethesda, MD. 
  • Merdink JL, RJ Bull, and IR Schultz. 2000. "Trapping and Identification of the Dichloroacetate Radical from the Reductive Dehalogenation of Trichloroacetate by Mouse and Rat Liver Microsomes." Free Radical Biology & Medicine 29(2):125-130. 
  • Petrie GM, VI Cullinan, LL Cadwell, JL Downs, EM Perry, and J Turner. 2000. "Integration of Hyperspectral Data for Rangeland Characterization." In International Archives of Photogrammetry and Remote Sensing (IAPRS), vol. 33, no. B7/3, pp. 1142-1148.  ISPRS, Stuttgardt, Germany. 
  • Trainer VL, NG Adams, BD Bill, CM Stehr, JC Wekell, P Moeller, M Busman, and DL Woodruff. 2000. "Domoic acid production near California coastal upwelling zones, June 1998." Limnology and Oceanography 45(8):1818-1833. 
  • Woodruff DL, PJ Farley, AB Borde, JA Southard, and RM Thom. 2000. King County Nearshore Habitat Mapping Data Report: Picnic Point to Shilshole Bay Marina PNNL-13396, Pacific Northwest National Laboratory, Richland, WA. 

1999

  • Pearson WH, RA Elston, RW Bienert, AS Drum, and LD Antrim. 1999. "Why did the Prince William Sound, Alaska, Pacific herring (Clupea pallasi) fisheries collapse in 1993 and 1994? Review of hypotheses." Canadian Journal of Fisheries and Aquatic Sciences 56(4):711-737. 
  • Schultz IR, and WL Hayton. 1999. "Interspecies Scaling of the Bioaccumulation of Lipophilic Xenobiotics in Fish: An Example Using Trifluralin." Environmental Toxicology and Chemistry 18(7):1440-1449. 
  • Schultz IR, and WL Hayton. 1999. "Predicting the Toxicokinetics of Trifluralin in Rainbow Trout Using Clearance-Volume Pharmacokinetic Models." In Xenobiotics in Fish, vol. VIII, ed. David J.Smith, William H.Gingerich, Maria G.Barker , pp. 133-148.  Kluwer Academic/Plenum Publishers, New York, NY. 
  • Bloom NS, and BK Lasorsa. 1999. "Changes in mercury speciation and the release of methyl mercury as a result of marine sediment dredging activities." Science of the Total Environment 238(special issue):379-385. 
  • Crecelius EA, LF Lefkovitz, and VI Cullinan. 1999. "The Sound is Cleaner: A Century of Contaminant Trends Observed from Dated Cores." In Oceans'99 MTS/IEEE Proceedings. Riding the Crest into the 21st Century., vol. 3, pp. 1381-1394.  Oceans '99 MTS/IEEE Conference Committee, Piscataway, NJ. 
  • Gonzalez-Leon A, JL Merdink, RJ Bull, and IR Schultz. 1999. "Effect of Pretreatment with Dichloroacetic or Trichloroacetic Acid in Drinking water on the Pharmacokinetics of a Subsequent Challenge Dose in B6C3F1 Mice." Chemico-Biological Interactions 123(3):239-53. 
  • Nassar AF, SV Lucas, and SA Thomas. 1999. "Determination of O-isopropyl methylphosphonic acid in living microorganism-agar matrixes using ion chromatography conductivity detection." Analytical Letters 32(5):1023-1035. 
  • Peters EL, IR Schultz, and MC Newman. 1999. "Rubidium and Cesium Kinetics and Tissue Distributions in Channel Catfish (Ictalurus punctatus) ." Ecotoxicology 8(4):287-300. 

1998

  • Pearson WH, SM Al-Ghais, JM Neff, CJ Brandt, KF Wellman, and T Green. 1998. "Assessment of Damages to Commercial Fisheries and Marine Environment of Fujairah, United Arab Emirates, Resulting from the Seki Oil Spill of March 1994: A Case Study." In Transformations of Middle Eastern Natural Environments: Legacies and Lessons, Bulletin series, vol. 103, pp. 407-428.  Yale School of Forestry & Environmental Studies, New Haven, CT. 
  • Johnson RL, DS Daly, and GE Johnson. 1998. "Combining Hydroacoustics, Flow Models to Study Fish Behavior." Hydro Review XVII(7):40-56. 
  • Randolph RC, JT Hardy, SW Fowler, ARG Price, and WH Pearson. 1998. "Toxicity and Persistence of Nearshore Sediment Contamination Following the 1991 Gulf War." Environment International 24:33-42. 

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